arXiv subjects

Yu Li

Publications and source records attributed to Yu Li.

At least 469 records · Page 26Linked to original sources

arXiv2021

A Dynamic Spatial-temporal Attention Network for Early Anticipation of Traffic Accidents

The rapid advancement of sensor technologies and artificial intelligence are creating new opportunities for traffic safety enhancement. Dashboard cameras (dashcams) have been widely deployed on both human driving vehicles and automated driving vehicles. A computational intelligence model that can accurately and promptly predict accidents from the dashcam video will enhance the preparedness for accident prevention. The spatial-temporal interaction of traffic agents is complex. Visual cues for predicting a future accident are embedded deeply in dashcam video data. Therefore, the early anticipation of traffic accidents remains a challenge. Inspired by the attention behavior of humans in visually perceiving accident risks, this paper proposes a Dynamic Spatial-Temporal Attention (DSTA) network for the early accident anticipation from dashcam videos. The DSTA-network learns to select discriminative temporal segments of a video sequence with a Dynamic Temporal Attention (DTA) module. It also learns to focus on the informative spatial regions of frames with a Dynamic Spatial Attention (DSA) module. A Gated Recurrent Unit (GRU) is trained jointly with the attention modules to predict the probability of a future accident. The evaluation of the DSTA-network on two benchmark datasets confirms that it has exceeded the state-of-the-art performance. A thorough ablation study that assesses the DSTA-network at the component level reveals how the network achieves such performance. Furthermore, this paper proposes a method to fuse the prediction scores from two complementary models and verifies its effectiveness in further boosting the performance of early accident anticipation.

cs.CV↗

arXiv2021

Improving Conversational Recommendation Systems' Quality with Context-Aware Item Meta Information

Conversational recommendation systems (CRS) engage with users by inferring user preferences from dialog history, providing accurate recommendations, and generating appropriate responses. Previous CRSs use knowledge graph (KG) based recommendation modules and integrate KG with language models for response generation. Although KG-based approaches prove effective, two issues remain to be solved. First, KG-based approaches ignore the information in the conversational context but only rely on entity relations and bag of words to recommend items. Second, it requires substantial engineering efforts to maintain KGs that model domain-specific relations, thus leading to less flexibility. In this paper, we propose a simple yet effective architecture comprising a pre-trained language model (PLM) and an item metadata encoder. The encoder learns to map item metadata to embeddings that can reflect the semantic information in the dialog context. The PLM then consumes the semantic-aligned item embeddings together with dialog context to generate high-quality recommendations and responses. Instead of modeling entity relations with KGs, our model reduces engineering complexity by directly converting each item to an embedding. Experimental results on the benchmark dataset ReDial show that our model obtains state-of-the-art results on both recommendation and response generation tasks.

cs.CL↗

arXiv2021

Contrastive Cycle Adversarial Autoencoders for Single-cell Multi-omics Alignment and Integration

Muilti-modality data are ubiquitous in biology, especially that we have entered the multi-omics era, when we can measure the same biological object (cell) from different aspects (omics) to provide a more comprehensive insight into the cellular system. When dealing with such multi-omics data, the first step is to determine the correspondence among different modalities. In other words, we should match data from different spaces corresponding to the same object. This problem is particularly challenging in the single-cell multi-omics scenario because such data are very sparse with extremely high dimensions. Secondly, matched single-cell multi-omics data are rare and hard to collect. Furthermore, due to the limitations of the experimental environment, the data are usually highly noisy. To promote the single-cell multi-omics research, we overcome the above challenges, proposing a novel framework to align and integrate single-cell RNA-seq data and single-cell ATAC-seq data. Our approach can efficiently map the above data with high sparsity and noise from different spaces to a low-dimensional manifold in a unified space, making the downstream alignment and integration straightforward. Compared with the other state-of-the-art methods, our method performs better in both simulated and real single-cell data. The proposed method is helpful for the single-cell multi-omics research. The improvement for integration on the simulated data is significant.

q-bio.GN↗

arXiv2021

Orthogonal Graph Neural Networks

Graph neural networks (GNNs) have received tremendous attention due to their superiority in learning node representations. These models rely on message passing and feature transformation functions to encode the structural and feature information from neighbors. However, stacking more convolutional layers significantly decreases the performance of GNNs. Most recent studies attribute this limitation to the over-smoothing issue, where node embeddings converge to indistinguishable vectors. Through a number of experimental observations, we argue that the main factor degrading the performance is the unstable forward normalization and backward gradient resulted from the improper design of the feature transformation, especially for shallow GNNs where the over-smoothing has not happened. Therefore, we propose a novel orthogonal feature transformation, named Ortho-GConv, which could generally augment the existing GNN backbones to stabilize the model training and improve the model's generalization performance. Specifically, we maintain the orthogonality of the feature transformation comprehensively from three perspectives, namely hybrid weight initialization, orthogonal transformation, and orthogonal regularization. By equipping the existing GNNs (e.g. GCN, JKNet, GCNII) with Ortho-GConv, we demonstrate the generality of the orthogonal feature transformation to enable stable training, and show its effectiveness for node and graph classification tasks.

cs.LG↗

arXiv2021

Orbital-Selective High-Temperature Cooper Pairing Developed in the Two-Dimensional Limit

The orbital multiplicity in multiband superconductors yields orbital differentiation in normal-state properties, and can lead to orbital-selective spin-fluctuation Cooper pairing. This phenomenon has become increasingly pivotal in clarifying the pairing 'enigma' particularly for multiband high-temperature superconductors. In one-unit-cell (1-UC) FeSe/SrTiO3, the thinnest and highest-Tc member of iron-based superconductors, the standard electron-hole Fermi pocket nesting scenario is apparently not applicable since the Gamma-centered hole pockets are absent, so the actual pairing mechanism is the subject of intense debate. Here, by measuring high-resolution Bogoliubov quasiparticle interference, we report observations of highly anisotropic magnetic Cooper pairing in 1-UC FeSe. From a theoretical point of view, it is important to incorporate effects of electronic correlations within a spin-fluctuation pairing calculation, where the dxy orbital becomes coherence-suppressed. The resulting pairing gap is compatible with the experimental findings, which suggests that high-Tc Cooper pairing with orbital selectivity applies to 1-UC FeSe. Our findings imply the general existence of orbital selectivity in iron-based superconductors and the universal importance of electron correlations in high-Tc superconductors.

cond-mat.supr-con↗

arXiv2021

AppealNet: An Efficient and Highly-Accurate Edge/Cloud Collaborative Architecture for DNN Inference

This paper presents AppealNet, a novel edge/cloud collaborative architecture that runs deep learning (DL) tasks more efficiently than state-of-the-art solutions. For a given input, AppealNet accurately predicts on-the-fly whether it can be successfully processed by the DL model deployed on the resource-constrained edge device, and if not, appeals to the more powerful DL model deployed at the cloud. This is achieved by employing a two-head neural network architecture that explicitly takes inference difficulty into consideration and optimizes the tradeoff between accuracy and computation/communication cost of the edge/cloud collaborative architecture. Experimental results on several image classification datasets show up to more than 40% energy savings compared to existing techniques without sacrificing accuracy.

cs.LG↗

arXiv2021

Protein-RNA interaction prediction with deep learning: Structure matters

Protein-RNA interactions are of vital importance to a variety of cellular activities. Both experimental and computational techniques have been developed to study the interactions. Due to the limitation of the previous database, especially the lack of protein structure data, most of the existing computational methods rely heavily on the sequence data, with only a small portion of the methods utilizing the structural information. Recently, AlphaFold has revolutionized the entire protein and biology field. Foreseeably, the protein-RNA interaction prediction will also be promoted significantly in the upcoming years. In this work, we give a thorough review of this field, surveying both the binding site and binding preference prediction problems and covering the commonly used datasets, features, and models. We also point out the potential challenges and opportunities in this field. This survey summarizes the development of the RBP-RNA interaction field in the past and foresees its future development in the post-AlphaFold era.

q-bio.BM↗

arXiv2021

CLMB: deep contrastive learning for robust metagenomic binning

The reconstruction of microbial genomes from large metagenomic datasets is a critical procedure for finding uncultivated microbial populations and defining their microbial functional roles. To achieve that, we need to perform metagenomic binning, clustering the assembled contigs into draft genomes. Despite the existing computational tools, most of them neglect one important property of the metagenomic data, that is, the noise. To further improve the metagenomic binning step and reconstruct better metagenomes, we propose a deep Contrastive Learning framework for Metagenome Binning (CLMB), which can efficiently eliminate the disturbance of noise and produce more stable and robust results. Essentially, instead of denoising the data explicitly, we add simulated noise to the training data and force the deep learning model to produce similar and stable representations for both the noise-free data and the distorted data. Consequently, the trained model will be robust to noise and handle it implicitly during usage. CLMB outperforms the previous state-of-the-art binning methods significantly, recovering the most near-complete genomes on almost all the benchmarking datasets (up to 17\% more reconstructed genomes compared to the second-best method). It also improves the performance of bin refinement, reconstructing 8-22 more high-quality genomes and 15-32 more middle-quality genomes than the second-best result. Impressively, in addition to being compatible with the binning refiner, single CLMB even recovers on average 15 more HQ genomes than the refiner of VAMB and Maxbin on the benchmarking datasets. CLMB is open-source and available at https://github.com/zpf0117b/CLMB/.

cs.LG↗

arXiv2021

GCGE: A Package for Solving Large Scale Eigenvalue Problems by Parallel Block Damping Inverse Power Method

We propose an eigensolver and the corresponding package, GCGE, for solving large scale eigenvalue problems. This method is the combination of damping idea, subspace projection method and inverse power method with dynamic shifts. To reduce the dimensions of projection subspaces, a moving mechanism is developed when the number of desired eigenpairs is large. The numerical methods, implementing techniques and the structure of the package are presented. Plenty of numerical results are provided to demonstrate the efficiency, stability and scalability of the concerned eigensolver and the package GCGE for computing many eigenpairs of large symmetric matrices arising from applications.

math.NA↗

arXiv2021

HMD-AMP: Protein Language-Powered Hierarchical Multi-label Deep Forest for Annotating Antimicrobial Peptides

Identifying the targets of an antimicrobial peptide is a fundamental step in studying the innate immune response and combating antibiotic resistance, and more broadly, precision medicine and public health. There have been extensive studies on the statistical and computational approaches to identify (i) whether a peptide is an antimicrobial peptide (AMP) or a non-AMP and (ii) which targets are these sequences effective to (Gram-positive, Gram-negative, etc.). Despite the existing deep learning methods on this problem, most of them are unable to handle the small AMP classes (anti-insect, anti-parasite, etc.). And more importantly, some AMPs can have multiple targets, which the previous methods fail to consider. In this study, we build a diverse and comprehensive multi-label protein sequence database by collecting and cleaning amino acids from various AMP databases. To generate efficient representations and features for the small classes dataset, we take advantage of a protein language model trained on 250 million protein sequences. Based on that, we develop an end-to-end hierarchical multi-label deep forest framework, HMD-AMP, to annotate AMP comprehensively. After identifying an AMP, it further predicts what targets the AMP can effectively kill from eleven available classes. Extensive experiments suggest that our framework outperforms state-of-the-art models in both the binary classification task and the multi-label classification task, especially on the minor classes.The model is robust against reduced features and small perturbations and produces promising results. We believe HMD-AMP contributes to both the future wet-lab investigations of the innate structural properties of different antimicrobial peptides and build promising empirical underpinnings for precise medicine with antibiotics.

cs.LG↗

arXiv2021

Show Me the Whole World: Towards Entire Item Space Exploration for Interactive Personalized Recommendations

User interest exploration is an important and challenging topic in recommender systems, which alleviates the closed-loop effects between recommendation models and user-item interactions. Contextual bandit (CB) algorithms strive to make a good trade-off between exploration and exploitation so that users' potential interests have chances to expose. However, classical CB algorithms can only be applied to a small, sampled item set (usually hundreds), which forces the typical applications in recommender systems limited to candidate post-ranking, homepage top item ranking, ad creative selection, or online model selection (A/B test). In this paper, we introduce two simple but effective hierarchical CB algorithms to make a classical CB model (such as LinUCB and Thompson Sampling) capable to explore users' interest in the entire item space without limiting it to a small item set. We first construct a hierarchy item tree via a bottom-up clustering algorithm to organize items in a coarse-to-fine manner. Then we propose a hierarchical CB (HCB) algorithm to explore users' interest in the hierarchy tree. HCB takes the exploration problem as a series of decision-making processes, where the goal is to find a path from the root to a leaf node, and the feedback will be back-propagated to all the nodes in the path. We further propose a progressive hierarchical CB (pHCB) algorithm, which progressively extends visible nodes which reach a confidence level for exploration, to avoid misleading actions on upper-level nodes in the sequential decision-making process. Extensive experiments on two public recommendation datasets demonstrate the effectiveness and flexibility of our methods.

cs.IR↗

arXiv2021

FLiText: A Faster and Lighter Semi-Supervised Text Classification with Convolution Networks

In natural language processing (NLP), state-of-the-art (SOTA) semi-supervised learning (SSL) frameworks have shown great performance on deep pre-trained language models such as BERT, and are expected to significantly reduce the demand for manual labeling. However, our empirical studies indicate that these frameworks are not suitable for lightweight models such as TextCNN, LSTM and etc. In this work, we develop a new SSL framework called FLiText, which stands for Faster and Lighter semi-supervised Text classification. FLiText introduces an inspirer network together with the consistency regularization framework, which leverages a generalized regular constraint on the lightweight models for efficient SSL. As a result, FLiText obtains new SOTA performance for lightweight models across multiple SSL benchmarks on text classification. Compared with existing SOTA SSL methods on TextCNN, FLiText improves the accuracy of lightweight model TextCNN from 51.00% to 90.49% on IMDb, 39.8% to 58.06% on Yelp-5, and from 55.3% to 65.08% on Yahoo. In addition, compared with the fully supervised method on the full dataset, FLiText just uses less than 1% of labeled data to improve the accuracy by 6.59%, 3.94%, and 3.22% on the datasets of IMDb, Yelp-5, and Yahoo respectively.

cs.CL↗

arXiv2021

Crash Report Data Analysis for Creating Scenario-Wise, Spatio-Temporal Attention Guidance to Support Computer Vision-based Perception of Fatal Crash Risks

Reducing traffic fatalities and serious injuries is a top priority of the US Department of Transportation. The computer vision (CV)-based crash anticipation in the near-crash phase is receiving growing attention. The ability to perceive fatal crash risks earlier is also critical because it will improve the reliability of crash anticipation. Yet, annotated image data for training a reliable AI model for the early visual perception of crash risks are not abundant. The Fatality Analysis Reporting System contains big data of fatal crashes. It is a reliable data source for learning the relationship between driving scene characteristics and fatal crashes to compensate for the limitation of CV. Therefore, this paper develops a data analytics model, named scenario-wise, Spatio-temporal attention guidance, from fatal crash report data, which can estimate the relevance of detected objects to fatal crashes from their environment and context information. First, the paper identifies five sparse variables that allow for decomposing the 5-year fatal crash dataset to develop scenario-wise attention guidance. Then, exploratory analysis of location- and time-related variables of the crash report data suggests reducing fatal crashes to spatially defined groups. The group's temporal pattern is an indicator of the similarity of fatal crashes in the group. Hierarchical clustering and K-means clustering merge the spatially defined groups into six clusters according to the similarity of their temporal patterns. After that, association rule mining discovers the statistical relationship between the temporal information of driving scenes with crash features, for each cluster. The paper shows how the developed attention guidance supports the design and implementation of a preliminary CV model that can identify objects of a possibility to involve in fatal crashes from their environment and context information.

stat.AP↗

arXiv2021

Binary Blends of Diblock Copolymers: An Efficient Route to Complex Spherical Packing Phases

The phase behaviour of binary blends composed of A$_1$B$_1$ and A$_2$B$_2$ diblock copolymers is systematically studied using the polymeric self-consistent field theory, focusing on the formation and relative stability of various spherical packing phases. The results are summarized in a set of phase diagrams covering a large phase space of the system. Besides the commonly observed body-centered-cubic (BCC) phase, complex spherical packing phases including the Frank-Kasper A15 and $σ$ and the Laves C14 and C15 phases could be stabilized by the addition of longer A$_2$B$_2$-copolymers to asymmetric A$_1$B$_1$-copolymers. Stabilizing the complex spherical packing phases requires that the added A$_2$B$_2$-copolymers have a longer A-block and an overall chain length at least comparable to the host copolymer chains. A detailed analysis of the block distributions reveals the existence of inter- and intra-domain segregation of different copolymers, which depends sensitively on the copolymer length ratio and composition. The predicted phase behaviours of the A$_1$B$_1$/A$_2$B$_2$ diblock copolymer blends are in good agreement with available experimental and theoretical results. The study demonstrated that binary blends of diblock copolymers provide an efficient route to regulate the emergence and stability of complex spherical packing phases.

cond-mat.soft↗

arXiv2021

Spatial-Temporal Deep Intention Destination Networks for Online Travel Planning

Nowadays, artificial neural networks are widely used for users' online travel planning. Personalized travel planning has many real applications and is affected by various factors, such as transportation type, intention destination estimation, budget limit and crowdness prediction. Among those factors, users' intention destination prediction is an essential task in online travel platforms. The reason is that, the user may be interested in the travel plan only when the plan matches his real intention destination. Therefore, in this paper, we focus on predicting users' intention destinations in online travel platforms. In detail, we act as online travel platforms (such as Fliggy and Airbnb) to recommend travel plans for users, and the plan consists of various vacation items including hotel package, scenic packages and so on. Predicting the actual intention destination in travel planning is challenging. Firstly, users' intention destination is highly related to their travel status (e.g., planning for a trip or finishing a trip). Secondly, users' actions (e.g. clicking, searching) over different product types (e.g. train tickets, visa application) have different indications in destination prediction. Thirdly, users may mostly visit the travel platforms just before public holidays, and thus user behaviors in online travel platforms are more sparse, low-frequency and long-period. Therefore, we propose a Deep Multi-Sequences fused neural Networks (DMSN) to predict intention destinations from fused multi-behavior sequences. Real datasets are used to evaluate the performance of our proposed DMSN models. Experimental results indicate that the proposed DMSN models can achieve high intention destination prediction accuracy.

cs.AI↗

arXiv2021

LHRM: A LBS based Heterogeneous Relations Model for User Cold Start Recommendation in Online Travel Platform

Most current recommender systems used the historical behaviour data of user to predict user' preference. However, it is difficult to recommend items to new users accurately. To alleviate this problem, existing user cold start methods either apply deep learning to build a cross-domain recommender system or map user attributes into the space of user behaviour. These methods are more challenging when applied to online travel platform (e.g., Fliggy), because it is hard to find a cross-domain that user has similar behaviour with travel scenarios and the Location Based Services (LBS) information of users have not been paid sufficient attention. In this work, we propose a LBS-based Heterogeneous Relations Model (LHRM) for user cold start recommendation, which utilizes user's LBS information and behaviour information in related domains and user's behaviour information in travel platforms (e.g., Fliggy) to construct the heterogeneous relations between users and items. Moreover, an attention-based multi-layer perceptron is applied to extract latent factors of users and items. Through this way, LHRM has better generalization performance than existing methods. Experimental results on real data from Fliggy's offline log illustrate the effectiveness of LHRM.

cs.IR↗

arXiv2021

Magnetic Bloch-point hopping in multilayer skyrmions and associated emergent electromagnetic signatures

Magnetic multilayers are promising tuneable systems for hosting magnetic skyrmions at/above room temperature. Revealing their intriguing switching mechanisms and associated inherent electrical responses are prerequisites for developing skyrmionic devices. In this work, we theoretically demonstrate the annihilation of single skyrmions occurring through a multilayer structure, which is mediated by hopping dynamics of topological hedgehog singularities known as Bloch points. The emerging intralayer dynamics of Bloch points are dominated by the Dzyaloshinskii-Moriya interaction, and their propagation can give rise to solenoidal emergent electric fields in the vicinity. Moreover, as the topology of spin textures can dominate their emergent magnetic properties, we show that the Bloch-point hopping through the multilayer will modulate the associated topological Hall response, with the magnitude proportional to the effective topological charge. We also investigate the thermodynamic stability of these states regarding the layer-dependent magnetic properties. This study casts light on the emergent electromagnetic signatures of skyrmion-based spintronics, rooted in magnetic-multilayer systems.

cond-mat.mes-hall↗

arXiv2021

Tracking Instances as Queries

Recently, query based deep networks catch lots of attention owing to their end-to-end pipeline and competitive results on several fundamental computer vision tasks, such as object detection, semantic segmentation, and instance segmentation. However, how to establish a query based video instance segmentation (VIS) framework with elegant architecture and strong performance remains to be settled. In this paper, we present \textbf{QueryTrack} (i.e., tracking instances as queries), a unified query based VIS framework fully leveraging the intrinsic one-to-one correspondence between instances and queries in QueryInst. The proposed method obtains 52.7 / 52.3 AP on YouTube-VIS-2019 / 2021 datasets, which wins the 2-nd place in the YouTube-VIS Challenge at CVPR 2021 \textbf{with a single online end-to-end model, single scale testing \& modest amount of training data}. We also provide QueryTrack-ResNet-50 baseline results on YouTube-VIS-2021 val set as references for the VIS community.

cs.CV↗