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Yu Li

Publications and source records attributed to Yu Li.

At least 163 records · Page 9Linked to original sources
arXiv2026

When Right Meets Wrong: Bilateral Context Conditioning with Reward-Confidence Correction for GRPO

Group Relative Policy Optimization (GRPO) has emerged as an effective method for training reasoning models. While it computes advantages based on group mean, GRPO treats each output as an independent sample during the optimization and overlooks a vital structural signal: the natural contrast between correct and incorrect solutions within the same group, thus ignoring the rich, comparative data that could be leveraged by explicitly pitting successful reasoning traces against failed ones. To capitalize on this, we present a contrastive reformulation of GRPO, showing that the GRPO objective implicitly maximizes the margin between the policy ratios of correct and incorrect samples. Building on this insight, we propose Bilateral Context Conditioning (BICC), a mechanism that allows the model to cross-reference successful and failed reasoning traces during the optimization, enabling a direct information flow across samples. We further introduce Reward-Confidence Correction (RCC) to stabilize training by dynamically adjusts the advantage baseline in GRPO using reward-confidence covariance derived from the first-order approximation of the variance-minimizing estimator. Both mechanisms require no additional sampling or auxiliary models and can be adapted to all GRPO variants. Experiments on mathematical reasoning benchmarks demonstrate consistent improvements across comprehensive models and algorithms. Code is available at \href{https://github.com/Skylanding/BiCC}{https://github.com/Skylanding/BiCC}.

cs.AI↗
arXiv2026

Trajectory Optimization for Self-Wrap-Aware Cable-Towed Planar Object Manipulation under Implicit Tension Constraints

Cable/rope elements are pervasive in deformable-object manipulation, often serving as a deformable force-transmission medium whose routing and contact determine how wrenches are delivered. In cable-towed manipulation, transmission is unilateral and hybrid: the tether can pull only when taut and becomes force-free when slack; in practice, the tether may also contact the object boundary and self-wrap around edges, which is not merely collision avoidance but a change of the wrench transmission channel by shifting the effective application point and moment arm, thereby coupling routing geometry with rigid-body motion and tensioning. We formulate self-wrap towing as a routing-aware, tensioning-implicit trajectory optimization (TITO) problem that couples (i) a tensioning-implicit taut/slack constraint and (ii) routing-conditioned transmission maps for effective length and wrench, and we build a relaxation hierarchy from a strict mode-conditioned reference to three tractable relaxations: Full-Mode Relaxation (FMR), Binary-Mode Relaxation (BMR), and Implicit-Mode Relaxation (IMR). Across planar towing tasks, we find that making routing an explicit decision often yields conservative solutions that stay near switching boundaries, whereas IMR induces self-wrap through state evolution and exploits the redirected torque channel whenever turning requires it.

cs.RO↗
arXiv2026

DynaTrust: Defending Multi-Agent Systems Against Sleeper Agents via Dynamic Trust Graphs

Large Language Model-based Multi-Agent Systems (MAS) have demonstrated remarkable collaborative reasoning capabilities but introduce new attack surfaces, such as the sleeper agent, which behave benignly during routine operation and gradually accumulate trust, only revealing malicious behaviors when specific conditions or triggers are met. Existing defense works primarily focus on static graph optimization or hierarchical data management, often failing to adapt to evolving adversarial strategies or suffering from high false-positive rates (FPR) due to rigid blocking policies. To address this, we propose DynaTrust, a novel defense method against sleeper agents. DynaTrust models MAS as a dynamic trust graph~(DTG), and treats trust as a continuous, evolving process rather than a static attribute. It dynamically updates the trust of each agent based on its historical behaviors and the confidence of selected expert agents. Instead of simply blocking, DynaTrust autonomously restructures the graph to isolate compromised agents and restore task connectivity to ensure the usability of MAS. To assess the effectiveness of DynaTrust, we evaluate it on mixed benchmarks derived from AdvBench and HumanEval. The results demonstrate that DynaTrust outperforms the state-of-the-art method AgentShield by increasing the defense success rate by 41.7%, achieving rates exceeding 86% under adversarial conditions. Furthermore, it effectively balances security with utility by significantly reducing FPR, ensuring uninterrupted system operations through graph adaptation.

cs.AI↗
arXiv2026

Quadratic form estimations for Hessian matrices of resistance distance and Kirchhoff index of positive-weighted graphs

Let $G^{w}=(V,E,w)$ be a positive-weighted graph with the weight $w(e)>0$ for all $e\in E$. The weighted graph $G^{\widetilde{w}}=(V,E,\widetilde{w})$ is called a hyper-dual number weighted graph, where the weight $\widetilde{w}(e)=w(e)+Δw(e)(\varepsilon+\varepsilon^{*})$ is a hyper dual number, $Δw(e)$ is a real number, $\varepsilon$ and $\varepsilon^{*}$ are two dual units, $e\in E$. In this paper, we give a representation for the Moore-Penrose inverse of the Laplacian matrix, and calculation formulas for the resistance distance and Kirchhoff index of $G^{\widetilde{w}}$, respectively. We establish quadratic forms of the Hessian matrices for the resistance distance and Kirchhoff index of $G^{w}$ via generalized matrix inverses. We further derive explicit bounds on the eigenvalues of the Hessian matrices for the resistance distance and the Kirchhoff index of $G^{w}$ in terms of graph parameters. We also prove that the Kirchhoff index of a positive-weighted graph with bounded edge weights is strongly convex on its edge weight vector.

math.CO↗
arXiv2026

UniPAR: A Unified Framework for Pedestrian Attribute Recognition

Pedestrian Attribute Recognition is a foundational computer vision task that provides essential support for downstream applications, including person retrieval in video surveillance and intelligent retail analytics. However, existing research is frequently constrained by the ``one-model-per-dataset" paradigm and struggles to handle significant discrepancies across domains in terms of modalities, attribute definitions, and environmental scenarios. To address these challenges, we propose UniPAR, a unified Transformer-based framework for PAR. By incorporating a unified data scheduling strategy and a dynamic classification head, UniPAR enables a single model to simultaneously process diverse datasets from heterogeneous modalities, including RGB images, video sequences, and event streams. We also introduce an innovative phased fusion encoder that explicitly aligns visual features with textual attribute queries through a late deep fusion strategy. Experimental results on the widely used benchmark datasets, including MSP60K, DukeMTMC, and EventPAR, demonstrate that UniPAR achieves performance comparable to specialized SOTA methods. Furthermore, multi-dataset joint training significantly enhances the model's cross-domain generalization and recognition robustness in extreme environments characterized by low light and motion blur. The source code of this paper will be released on https://github.com/Event-AHU/OpenPAR

cs.CV↗
arXiv2026

Mozi: Governed Autonomy for Drug Discovery LLM Agents

Tool-augmented large language model (LLM) agents promise to unify scientific reasoning with computation, yet their deployment in high-stakes domains like drug discovery is bottlenecked by two critical barriers: unconstrained tool-use governance and poor long-horizon reliability. In dependency-heavy pharmaceutical pipelines, autonomous agents often drift into irreproducible trajectories, where early-stage hallucinations multiplicatively compound into downstream failures. To overcome this, we present Mozi, a dual-layer architecture that bridges the flexibility of generative AI with the deterministic rigor of computational biology. Layer A (Control Plane) establishes a governed supervisor--worker hierarchy that enforces role-based tool isolation, limits execution to constrained action spaces, and drives reflection-based replanning. Layer B (Workflow Plane) operationalizes canonical drug discovery stages -- from Target Identification to Lead Optimization -- as stateful, composable skill graphs. This layer integrates strict data contracts and strategic human-in-the-loop (HITL) checkpoints to safeguard scientific validity at high-uncertainty decision boundaries. Operating on the design principle of ``free-form reasoning for safe tasks, structured execution for long-horizon pipelines,'' Mozi provides built-in robustness mechanisms and trace-level audibility to completely mitigate error accumulation. We evaluate Mozi on PharmaBench, a curated benchmark for biomedical agents, demonstrating superior orchestration accuracy over existing baselines. Furthermore, through end-to-end therapeutic case studies, we demonstrate Mozi's ability to navigate massive chemical spaces, enforce stringent toxicity filters, and generate highly competitive in silico candidates, effectively transforming the LLM from a fragile conversationalist into a reliable, governed co-scientist.

cs.AI↗
arXiv2026

CRAFT-LoRA: Content-Style Personalization via Rank-Constrained Adaptation and Training-Free Fusion

Personalized image generation requires effectively balancing content fidelity with stylistic consistency when synthesizing images based on text and reference examples. Low-Rank Adaptation (LoRA) offers an efficient personalization approach, with potential for precise control through combining LoRA weights on different concepts. However, existing combination techniques face persistent challenges: entanglement between content and style representations, insufficient guidance for controlling elements' influence, and unstable weight fusion that often require additional training. We address these limitations through CRAFT-LoRA, with complementary components: (1) rank-constrained backbone fine-tuning that injects low-rank projection residuals to encourage learning decoupled content and style subspaces; (2) a prompt-guided approach featuring an expert encoder with specialized branches that enables semantic extension and precise control through selective adapter aggregation; and (3) a training-free, timestep-dependent classifier-free guidance scheme that enhances generation stability by strategically adjusting noise predictions across diffusion steps. Our method significantly improves content-style disentanglement, enables flexible semantic control over LoRA module combinations, and achieves high-fidelity generation without additional retraining overhead.

cs.CV↗
arXiv2026

Large Language Models in Bioinformatics: A Survey

Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling, RNA structure prediction, protein function inference, and single-cell transcriptomics. Meanwhile, we also discuss several key challenges, including data scarcity, computational complexity, and cross-omics integration, and explore future directions such as multimodal learning, hybrid AI models, and clinical applications. By offering a comprehensive perspective, this paper underscores the transformative potential of LLMs in driving innovations in bioinformatics and precision medicine.

cs.CL↗
arXiv2026

A Survey of Data Agents: Emerging Paradigm or Overstated Hype?

The rapid advancement of large language models (LLMs) has spurred the emergence of data agents, autonomous systems designed to orchestrate Data + AI ecosystems for tackling complex data-related tasks. However, the term "data agent" currently suffers from terminological ambiguity and inconsistent adoption, conflating simple query responders with sophisticated autonomous architectures. This terminological ambiguity fosters mismatched user expectations, accountability challenges, and barriers to industry growth. Inspired by the SAE J3016 standard for driving automation, this survey introduces the first systematic hierarchical taxonomy for data agents, comprising six levels that delineate and trace progressive shifts in autonomy, from manual operations (L0) to a vision of generative, fully autonomous data agents (L5), thereby clarifying capability boundaries and responsibility allocation. Through this lens, we offer a structured review of existing research arranged by increasing autonomy, encompassing specialized data agents for data management, preparation, and analysis, alongside emerging efforts toward versatile, comprehensive systems with enhanced autonomy. We further analyze critical evolutionary leaps and technical gaps for advancing data agents, especially the ongoing L2-to-L3 transition, where data agents evolve from procedural execution to autonomous orchestration. Finally, we conclude with a forward-looking roadmap, envisioning proactive, generative data agents.

cs.DB↗
arXiv2026

Symbol-Aware Precoder Design for Physical-Layer Anonymous Communications

Physical-layer characteristics, such as channel state information (CSI) and transmitter noise induced by hardware impairments, are often uniquely associated with a transmitter. This paper investigates transmitter anonymity at the physical layer from a signal design perspective. We consider an anonymous communication problem where the receiver should reliably decode the signal from the transmitter but should not make use of the signal to infer the transmitter's identity.Transmitter anonymity is quantified using a Kullback-Leibler divergence (KLD)-based metric, which enables the formulation of explicit anonymity constraints in the precoder design.We then propose an anonymous symbol-level precoding strategy that preserves reliable communication under spatial multiplexing while preventing transmitter identification. The proposed framework employs a partitioned equal-gain combining (P-EGC) scheme that leverages receiver diversity without requiring transmitter-specific CSI. Simulation results demonstrate anonymity-reliability tradeoffs across different signal-to-noise ratios (SNRs) and numbers of data streams. Moreover, the results reveal opposite trends of anonymity with respect to transmitter-dependent noise variations in the low-SNR and high-SNR regimes.

eess.SP↗
arXiv2026

Frontier AI Risk Management Framework in Practice: A Risk Analysis Technical Report v1.5

To understand and identify the unprecedented risks posed by rapidly advancing artificial intelligence (AI) models, Frontier AI Risk Management Framework in Practice presents a comprehensive assessment of their frontier risks. As Large Language Models (LLMs) general capabilities rapidly evolve and the proliferation of agentic AI, this version of the risk analysis technical report presents an updated and granular assessment of five critical dimensions: cyber offense, persuasion and manipulation, strategic deception, uncontrolled AI R\&D, and self-replication. Specifically, we introduce more complex scenarios for cyber offense. For persuasion and manipulation, we evaluate the risk of LLM-to-LLM persuasion on newly released LLMs. For strategic deception and scheming, we add the new experiment with respect to emergent misalignment. For uncontrolled AI R\&D, we focus on the ``mis-evolution'' of agents as they autonomously expand their memory substrates and toolsets. Besides, we also monitor and evaluate the safety performance of OpenClaw during the interaction on the Moltbook. For self-replication, we introduce a new resource-constrained scenario. More importantly, we propose and validate a series of robust mitigation strategies to address these emerging threats, providing a preliminary technical and actionable pathway for the secure deployment of frontier AI. This work reflects our current understanding of AI frontier risks and urges collective action to mitigate these challenges.

cs.AI↗
arXiv2026

A Novel 4-D Dataset Paradigm for Studying Complete Ligand-Protein Dissociation Dynamics

The kinetics and dynamics of drug-protein binding and dissociation are crucial to understanding drug absorption and metabolism. Despite advances in artificial intelligence (AI) tools for drug-protein interaction studies, existing training datasets remain limited to static structures or quasi-static conformations. This paper proposes a novel computational approach for rapidly generating drug-protein dissociation trajectories and presents the inaugural dynamically time-resolved 4-D (t, x, y, z) trajectory database DD-13M. This dataset captures over 26,000 complete dissociation processes for 565 ligand-protein complexes, providing nearly 13 million frames of all-atom simulation trajectories. A deep equivariant generative model, UnbindingFlow, was trained using the DD-13M dataset. This model has the capacity to produce dissociation trajectories for novel targets whilst accurately predicting their rate constants (koff). DD-13M introduces a new type of training dataset for AI models, establishing a de novo paradigm for studying the dynamics of drug-protein interactions.

physics.comp-ph↗
arXiv2026

Investigating Data Pruning for Pretraining Biological Foundation Models at Scale

Biological foundation models (BioFMs), pretrained on large-scale biological sequences, have recently shown strong potential in providing meaningful representations for diverse downstream bioinformatics tasks. However, such models often rely on millions to billions of training sequences and billions of parameters, resulting in prohibitive computational costs and significant barriers to reproducibility and accessibility, particularly for academic labs. To address these challenges, we investigate the feasibility of data pruning for BioFM pretraining and propose a post-hoc influence-guided data pruning framework tailored to biological domains. Our approach introduces a subset-based self-influence formulation that enables efficient estimation of sample importance at low computational cost, and builds upon it two simple yet effective selection strategies, namely Top-k Influence (Top I) and Coverage-Centric Influence (CCI). We empirically validate our method on two representative BioFMs, RNA-FM and ESM-C. For RNA, our framework consistently outperforms random selection baselines under an extreme pruning rate of over 99 percent, demonstrating its effectiveness. Furthermore, we show the generalizability of our framework on protein-related tasks using ESM-C. In particular, our coreset even outperforms random subsets that are ten times larger in both RNA and protein settings, revealing substantial redundancy in biological sequence datasets. These findings underscore the potential of influence-guided data pruning to substantially reduce the computational cost of BioFM pretraining, paving the way for more efficient, accessible, and sustainable biological AI research.

cs.LG↗
arXiv2026

InSPO: Unlocking Intrinsic Self-Reflection for LLM Preference Optimization

Direct Preference Optimization (DPO) and its variants have become standard for aligning Large Language Models due to their simplicity and offline stability. However, we identify two fundamental limitations. First, the optimal policy depends on arbitrary modeling choices (scalarization function, reference policy), yielding behavior reflecting parameterization artifacts rather than true preferences. Second, treating response generation in isolation fails to leverage comparative information in pairwise data, leaving the model's capacity for intrinsic self-reflection untapped. To address it, we propose Intrinsic Self-reflective Preference Optimization (InSPO), deriving a globally optimal policy conditioning on both context and alternative responses. We prove this formulation superior to DPO/RLHF while guaranteeing invariance to scalarization and reference choices. InSPO serves as a plug-and-play enhancement without architectural changes or inference overhead. Experiments demonstrate consistent improvements in win rates and length-controlled metrics, validating that unlocking self-reflection yields more robust, human-aligned LLMs. Our Code is available at https://github.com/Skylanding/InSPO.

cs.AI↗
arXiv2026

CineScene: Implicit 3D as Effective Scene Representation for Cinematic Video Generation

Cinematic video production requires control over scene-subject composition and camera movement, but live-action shooting remains costly due to the need for constructing physical sets. To address this, we introduce the task of cinematic video generation with decoupled scene context: given multiple images of a static environment, the goal is to synthesize high-quality videos featuring dynamic subject while preserving the underlying scene consistency and following a user-specified camera trajectory. We present CineScene, a framework that leverages implicit 3D-aware scene representation for cinematic video generation. Our key innovation is a novel context conditioning mechanism that injects 3D-aware features in an implicit way: By encoding scene images into visual representations through VGGT, CineScene injects spatial priors into a pretrained text-to-video generation model by additional context concatenation, enabling camera-controlled video synthesis with consistent scenes and dynamic subjects. To further enhance the model's robustness, we introduce a simple yet effective random-shuffling strategy for the input scene images during training. To address the lack of training data, we construct a scene-decoupled dataset with Unreal Engine 5, containing paired videos of scenes with and without dynamic subjects, panoramic images representing the underlying static scene, along with their camera trajectories. Experiments show that CineScene achieves state-of-the-art performance in scene-consistent cinematic video generation, handling large camera movements and demonstrating generalization across diverse environments.

cs.CV↗
arXiv2026

PEAR: Pixel-aligned Expressive humAn mesh Recovery

Reconstructing detailed 3D human meshes from a single in-the-wild image remains a fundamental challenge in computer vision. Existing SMPLX-based methods often suffer from slow inference, produce only coarse body poses, and exhibit misalignments or unnatural artifacts in fine-grained regions such as the face and hands. These issues make current approaches difficult to apply to downstream tasks. To address these challenges, we propose PEAR-a fast and robust framework for pixel-aligned expressive human mesh recovery. PEAR explicitly tackles three major limitations of existing methods: slow inference, inaccurate localization of fine-grained human pose details, and insufficient facial expression capture. Specifically, to enable real-time SMPLX parameter inference, we depart from prior designs that rely on high resolution inputs or multi-branch architectures. Instead, we adopt a clean and unified ViT-based model capable of recovering coarse 3D human geometry. To compensate for the loss of fine-grained details caused by this simplified architecture, we introduce pixel-level supervision to optimize the geometry, significantly improving the reconstruction accuracy of fine-grained human details. To make this approach practical, we further propose a modular data annotation strategy that enriches the training data and enhances the robustness of the model. Overall, PEAR is a preprocessing-free framework that can simultaneously infer EHM-s (SMPLX and scaled-FLAME) parameters at over 100 FPS. Extensive experiments on multiple benchmark datasets demonstrate that our method achieves substantial improvements in pose estimation accuracy compared to previous SMPLX-based approaches. Project page: https://wujh2001.github.io/PEAR

cs.CV↗
arXiv2026

Agentic reinforcement learning empowers next-generation chemical language models for molecular design and synthesis

Language models are revolutionizing the biochemistry domain, assisting scientists in drug design and chemical synthesis with high efficiency. Yet current approaches struggle between small language models prone to hallucination and limited knowledge retention, and large cloud-based language models plagued by privacy risks and high inference costs. To bridge this gap, we introduce ChemCRAFT, a novel framework leveraging agentic reinforcement learning to decouple chemical reasoning from knowledge storage. Instead of forcing the model to memorize vast chemical data, our approach empowers the language model to interact with a sandbox for precise information retrieval. This externalization of knowledge allows a locally deployable small model to achieve superior performance with minimal inference costs. To enable small language models for agent-calling ability, we build an agentic trajectory construction pipeline and a comprehensive chemical-agent sandbox. Based on sandbox interactions, we constructed ChemToolDataset, the first large-scale chemical tool trajectory dataset. Simultaneously, we propose SMILES-GRPO to build a dense chemical reward function, promoting the model's ability to call chemical agents. Evaluations across diverse aspects of drug design show that ChemCRAFT outperforms current cloud-based LLMs in molecular structure analysis, molecular optimization, and synthesis pathway prediction, demonstrating that scientific reasoning is not solely an emergent ability of model scale, but a learnable policy of tool orchestration. This work establishes a cost-effective and privacy-preserving paradigm for AI-aided chemistry, opening new avenues for accelerating molecular discovery with locally deployable agents. Code available at https://github.com/HowardLi1984/ChemCraft.

cs.LG↗
arXiv2026

AgentGuard: A Multi-Agent Framework for Robust Package Confusion Detection via Hybrid Search and Metadata-Content Fusion

The proliferation of open-source software (OSS) has made software supply chains prime targets for attacks like Package Confusion, where adversaries publish malicious packages with names deceptively similar to legitimate ones. To protect against such attacks and safeguard the use of OSS, multiple confusion detection methods have been proposed. However, existing methods are limited to single-signal retrieval strategies (relying solely on lexical or semantic metrics), struggle with high false positive rates (FPR), and are vulnerable to adversarial evasion. Critically, as content-agnostic approaches, they fundamentally fail to distinguish benign packages with high naming similarity from malicious, code-dissimilar impersonations, leading to persistent high FPR. To address these limitations, we introduce AgentGuard, a novel multi-agents based framework for package confusion detection. Specifically, it first discovers potential confusion targets using fine-tuned word embedding models with hybrid similarity search. After that, It subsequently evaluates risk via a fused machine learning model that uniquely combines: (1) a multi-dimensional metadata group and (2) a novel package content analysis group, to reduce the FPR and mitigate the impact of adversarial evasion. To assess the effectiveness of AgentGuard, we evaluate it on challenging ConfuDB and NeupaneDB datasets. Our results demonstrate that AgentGuard significantly outperforms state-of-the-art baselines, ConfuGuard and Typomind, improving precision by 12\%-49\% while simultaneously reducing the FPR by 11\%-35\%, and effectively discovers the confused package.

cs.SE↗