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Yucheng Zhang

Publications and source records attributed to Yucheng Zhang.

At least 37 records · Page 2Linked to original sources
arXiv2024

Exact: Exploring Space-Time Perceptive Clues for Weakly Supervised Satellite Image Time Series Semantic Segmentation

Automated crop mapping through Satellite Image Time Series (SITS) has emerged as a crucial avenue for agricultural monitoring and management. However, due to the low resolution and unclear parcel boundaries, annotating pixel-level masks is exceptionally complex and time-consuming in SITS. This paper embraces the weakly supervised paradigm (i.e., only image-level categories available) to liberate the crop mapping task from the exhaustive annotation burden. The unique characteristics of SITS give rise to several challenges in weakly supervised learning: (1) noise perturbation from spatially neighboring regions, and (2) erroneous semantic bias from anomalous temporal periods. To address the above difficulties, we propose a novel method, termed exploring space-time perceptive clues (Exact). First, we introduce a set of spatial clues to explicitly capture the representative patterns of different crops from the most class-relative regions. Besides, we leverage the temporal-to-class interaction of the model to emphasize the contributions of pivotal clips, thereby enhancing the model perception for crop regions. Build upon the space-time perceptive clues, we derive the clue-based CAMs to effectively supervise the SITS segmentation network. Our method demonstrates impressive performance on various SITS benchmarks. Remarkably, the segmentation network trained on Exact-generated masks achieves 95% of its fully supervised performance, showing the bright promise of weakly supervised paradigm in crop mapping scenario. Our code will be publicly available.

cs.CV↗
arXiv2024

Electrically functionalized body surface for deep-tissue bioelectrical recording

Directly probing deep tissue activities from body surfaces offers a noninvasive approach to monitoring essential physiological processes1-3. However, this method is technically challenged by rapid signal attenuation toward the body surface and confounding motion artifacts4-6 primarily due to excessive contact impedance and mechanical mismatch with conventional electrodes. Herein, by formulating and directly spray coating biocompatible two-dimensional nanosheet ink onto the human body under ambient conditions, we create microscopically conformal and adaptive van der Waals thin films (VDWTFs) that seamlessly merge with non-Euclidean, hairy, and dynamically evolving body surfaces. Unlike traditional deposition methods, which often struggle with conformality and adaptability while retaining high electronic performance, this gentle process enables the formation of high-performance VDWTFs directly on the body surface under bio-friendly conditions, making it ideal for biological applications. This results in low-impedance electrically functionalized body surfaces (EFBS), enabling highly robust monitoring of biopotential and bioimpedance modulations associated with deep-tissue activities, such as blood circulation, muscle movements, and brain activities. Compared to commercial solutions, our VDWTF-EFBS exhibits nearly two-orders of magnitude lower contact impedance and substantially reduces the extrinsic motion artifacts, enabling reliable extraction of bioelectrical signals from irregular surfaces, such as unshaved human scalps. This advancement defines a technology for continuous, noninvasive monitoring of deep-tissue activities during routine body movements.

physics.med-ph↗
arXiv2024

HijackRAG: Hijacking Attacks against Retrieval-Augmented Large Language Models

Retrieval-Augmented Generation (RAG) systems enhance large language models (LLMs) by integrating external knowledge, making them adaptable and cost-effective for various applications. However, the growing reliance on these systems also introduces potential security risks. In this work, we reveal a novel vulnerability, the retrieval prompt hijack attack (HijackRAG), which enables attackers to manipulate the retrieval mechanisms of RAG systems by injecting malicious texts into the knowledge database. When the RAG system encounters target questions, it generates the attacker's pre-determined answers instead of the correct ones, undermining the integrity and trustworthiness of the system. We formalize HijackRAG as an optimization problem and propose both black-box and white-box attack strategies tailored to different levels of the attacker's knowledge. Extensive experiments on multiple benchmark datasets show that HijackRAG consistently achieves high attack success rates, outperforming existing baseline attacks. Furthermore, we demonstrate that the attack is transferable across different retriever models, underscoring the widespread risk it poses to RAG systems. Lastly, our exploration of various defense mechanisms reveals that they are insufficient to counter HijackRAG, emphasizing the urgent need for more robust security measures to protect RAG systems in real-world deployments.

cs.CR↗
arXiv2024

A Hamiltonian, post-Born, three-dimensional, on-the-fly ray tracing algorithm for gravitational lensing

The analyses of the next generation cosmological surveys demand an accurate, efficient, and differentiable method for simulating the universe and its observables across cosmological volumes. We present Hamiltonian ray tracing (HRT) -- the first post-Born (accounting for lens-lens coupling and without relying on the Born approximation), three-dimensional (without assuming the thin-lens approximation), and on-the-fly (applicable to any structure formation simulations) ray tracing algorithm based on the Hamiltonian formalism. HRT performs symplectic integration of the photon geodesics in a weak gravitational field, and can integrate tightly with any gravity solver, enabling co-evolution of matter particles and light rays with minimal additional computations. We implement HRT in the particle-mesh library $\texttt{pmwd}$, leveraging hardware accelerators such as GPUs and automatic differentiation capabilities based on $\texttt{JAX}$. When tested on a point-mass lens, HRT achieves sub-percent accuracy in deflection angles above the resolution limit across both weak and moderately strong lensing regimes. We also test HRT in cosmological simulations on the convergence maps and their power spectra.

astro-ph.CO↗
arXiv2024

The multi-component fitting to the star formation histories in the TNG simulation

The star formation history (SFH) is a key issue in the evolution of galaxies. In this work, we developed a model based on a Gaussian and gamma function mixture to fit SFHs with varying numbers of components. Our primary objective was to use this model to reveal the shape of SFHs and the corresponding physical driving factors. Specifically, we applied this model to fit SFHs from the TNG100-1 simulation. Our study led to the following findings: 1) Our model fits with TNG star formation histories well, especially for high-mass and red galaxies; 2) A clear relationship exists between the number and shape of fitted components and the mass and color of galaxies, with notable differences observed between central/isolated and satellite galaxies. 3) Our model allowed us to extract different episodes of star formation within star formation histories with ease and analyze the duration and timing of each star formation episode. Our findings indicated a strong relationship between the timing of each star formation episode and galaxy mass and color.

astro-ph.GA↗
arXiv2024

TopoLogic: An Interpretable Pipeline for Lane Topology Reasoning on Driving Scenes

As an emerging task that integrates perception and reasoning, topology reasoning in autonomous driving scenes has recently garnered widespread attention. However, existing work often emphasizes "perception over reasoning": they typically boost reasoning performance by enhancing the perception of lanes and directly adopt MLP to learn lane topology from lane query. This paradigm overlooks the geometric features intrinsic to the lanes themselves and are prone to being influenced by inherent endpoint shifts in lane detection. To tackle this issue, we propose an interpretable method for lane topology reasoning based on lane geometric distance and lane query similarity, named TopoLogic. This method mitigates the impact of endpoint shifts in geometric space, and introduces explicit similarity calculation in semantic space as a complement. By integrating results from both spaces, our methods provides more comprehensive information for lane topology. Ultimately, our approach significantly outperforms the existing state-of-the-art methods on the mainstream benchmark OpenLane-V2 (23.9 v.s. 10.9 in TOP$_{ll}$ and 44.1 v.s. 39.8 in OLS on subset_A. Additionally, our proposed geometric distance topology reasoning method can be incorporated into well-trained models without re-training, significantly boost the performance of lane topology reasoning. The code is released at https://github.com/Franpin/TopoLogic.

cs.CV↗
arXiv2024

MovieChat: From Dense Token to Sparse Memory for Long Video Understanding

Recently, integrating video foundation models and large language models to build a video understanding system can overcome the limitations of specific pre-defined vision tasks. Yet, existing systems can only handle videos with very few frames. For long videos, the computation complexity, memory cost, and long-term temporal connection impose additional challenges. Taking advantage of the Atkinson-Shiffrin memory model, with tokens in Transformers being employed as the carriers of memory in combination with our specially designed memory mechanism, we propose the MovieChat to overcome these challenges. MovieChat achieves state-of-the-art performance in long video understanding, along with the released MovieChat-1K benchmark with 1K long video and 14K manual annotations for validation of the effectiveness of our method.

cs.CV↗
arXiv2024

Differentiable Cosmological Simulation with Adjoint Method

Rapid advances in deep learning have brought not only myriad powerful neural networks, but also breakthroughs that benefit established scientific research. In particular, automatic differentiation (AD) tools and computational accelerators like GPUs have facilitated forward modeling of the Universe with differentiable simulations. Based on analytic or automatic backpropagation, current differentiable cosmological simulations are limited by memory, and thus are subject to a trade-off between time and space/mass resolution, usually sacrificing both. We present a new approach free of such constraints, using the adjoint method and reverse time integration. It enables larger and more accurate forward modeling at the field level, and will improve gradient based optimization and inference. We implement it in an open-source particle-mesh (PM) $N$-body library pmwd (particle-mesh with derivatives). Based on the powerful AD system JAX, pmwd is fully differentiable, and is highly performant on GPUs.

astro-ph.IM↗
arXiv2023

Deep Radon Prior: A Fully Unsupervised Framework for Sparse-View CT Reconstruction

Although sparse-view computed tomography (CT) has significantly reduced radiation dose, it also introduces severe artifacts which degrade the image quality. In recent years, deep learning-based methods for inverse problems have made remarkable progress and have become increasingly popular in CT reconstruction. However, most of these methods suffer several limitations: dependence on high-quality training data, weak interpretability, etc. In this study, we propose a fully unsupervised framework called Deep Radon Prior (DRP), inspired by Deep Image Prior (DIP), to address the aforementioned limitations. DRP introduces a neural network as an implicit prior into the iterative method, thereby realizing cross-domain gradient feedback. During the reconstruction process, the neural network is progressively optimized in multiple stages to narrow the solution space in radon domain for the under-constrained imaging protocol, and the convergence of the proposed method has been discussed in this work. Compared with the popular pre-trained method, the proposed framework requires no dataset and exhibits superior interpretability and generalization ability. The experimental results demonstrate that the proposed method can generate detailed images while effectively suppressing image artifacts.Meanwhile, DRP achieves comparable or better performance than the supervised methods.

eess.IV↗
arXiv2023

Broadband nonlinear modulation of incoherent light using a transparent optoelectronic neuron array

Nonlinear optical processing of ambient natural light is highly desired in computational imaging and sensing applications. A strong optical nonlinear response that can work under weak broadband incoherent light is essential for this purpose. Here we introduce an optoelectronic nonlinear filter array that can address this emerging need. By merging 2D transparent phototransistors (TPTs) with liquid crystal (LC) modulators, we create an optoelectronic neuron array that allows self-amplitude modulation of spatially incoherent light, achieving a large nonlinear contrast over a broad spectrum at orders-of-magnitude lower intensity than what is achievable in most optical nonlinear materials. For a proof-of-concept demonstration, we fabricated a 10,000-pixel array of optoelectronic neurons, each serving as a nonlinear filter, and experimentally demonstrated an intelligent imaging system that uses the nonlinear response to instantly reduce input glares while retaining the weaker-intensity objects within the field of view of a cellphone camera. This intelligent glare-reduction capability is important for various imaging applications, including autonomous driving, machine vision, and security cameras. Beyond imaging and sensing, this optoelectronic neuron array, with its rapid nonlinear modulation for processing incoherent broadband light, might also find applications in optical computing, where nonlinear activation functions that can work under ambient light conditions are highly sought.

physics.optics↗
arXiv2023

PALF: Pre-Annotation and Camera-LiDAR Late Fusion for the Easy Annotation of Point Clouds

3D object detection has become indispensable in the field of autonomous driving. To date, gratifying breakthroughs have been recorded in 3D object detection research, attributed to deep learning. However, deep learning algorithms are data-driven and require large amounts of annotated point cloud data for training and evaluation. Unlike 2D image labels, annotating point cloud data is difficult due to the limitations of sparsity, irregularity, and low resolution, which requires more manual work, and the annotation efficiency is much lower than 2D image.Therefore, we propose an annotation algorithm for point cloud data, which is pre-annotation and camera-LiDAR late fusion algorithm to easily and accurately annotate. The contributions of this study are as follows. We propose (1) a pre-annotation algorithm that employs 3D object detection and auto fitting for the easy annotation of point clouds, (2) a camera-LiDAR late fusion algorithm using 2D and 3D results for easily error checking, which helps annotators easily identify missing objects, and (3) a point cloud annotation evaluation pipeline to evaluate our experiments. The experimental results show that the proposed algorithm improves the annotating speed by 6.5 times and the annotation quality in terms of the 3D Intersection over Union and precision by 8.2 points and 5.6 points, respectively; additionally, the miss rate is reduced by 31.9 points.

cs.CV↗
arXiv2023

Characterizing the Conditional Galaxy Property Distribution using Gaussian Mixture Models

Line-intensity mapping (LIM) is a promising technique to constrain the global distribution of galaxy properties. To combine LIM experiments probing different tracers with traditional galaxy surveys and fully exploit the scientific potential of these observations, it is necessary to have a physically motivated modeling framework. As part of developing such a framework, in this work we introduce and model the conditional galaxy property distribution (CGPD), i.e. the distribution of galaxy properties conditioned on the host halo mass and redshift. We consider five galaxy properties, including the galaxy stellar mass, molecular gas mass, galaxy radius, gas phase metallicity and star formation rate (SFR), which are important for predicting the emission lines of interest. The CGPD represents the full distribution of galaxies in the five dimensional property space; many important galaxy distribution functions and scaling relations, such as the stellar mass function and SFR main sequence, can be derived from integrating and projecting it. We utilize two different kinds of cosmological galaxy simulations, a semi-analytic model and the IllustrisTNG hydrodynamic simulation, to characterize the CGPD and explore how well it can be represented using a Gaussian mixture model (GMM). We find that with just a few ($\sim 3$) Gaussian components, a GMM can describe the CGPD of the simulated galaxies to high accuracy for both simulations. The CGPD can be mapped to LIM or other observables by constructing the appropriate relationship between galaxy properties and the relevant observable tracers.

astro-ph.GA↗
arXiv2022

pmwd: A Differentiable Cosmological Particle-Mesh $N$-body Library

The formation of the large-scale structure, the evolution and distribution of galaxies, quasars, and dark matter on cosmological scales, requires numerical simulations. Differentiable simulations provide gradients of the cosmological parameters, that can accelerate the extraction of physical information from statistical analyses of observational data. The deep learning revolution has brought not only myriad powerful neural networks, but also breakthroughs including automatic differentiation (AD) tools and computational accelerators like GPUs, facilitating forward modeling of the Universe with differentiable simulations. Because AD needs to save the whole forward evolution history to backpropagate gradients, current differentiable cosmological simulations are limited by memory. Using the adjoint method, with reverse time integration to reconstruct the evolution history, we develop a differentiable cosmological particle-mesh (PM) simulation library pmwd (particle-mesh with derivatives) with a low memory cost. Based on the powerful AD library JAX, pmwd is fully differentiable, and is highly performant on GPUs.

astro-ph.IM↗
arXiv2021

Joint analyses of 2D CMB lensing and 3D galaxy clustering in the spherical Fourier-Bessel basis

Cross-correlating cosmic microwave background (CMB) lensing and galaxy clustering has been shown to greatly improve the constraints on the local primordial non-Gaussianity (PNG) parameter $f_{\rm NL}$ by reducing sample variance and also parameter degeneracies. To model the full use of the 3D information of galaxy clustering, we forecast $f_{\rm NL}$ measurements using the decomposition in the spherical Fourier-Bessel (SFB) basis, which can be naturally cross-correlated with 2D CMB lensing in spherical harmonics. In the meantime, such a decomposition would also enable us to constrain the growth rate of structure, a probe of gravity, through the redshift-space distortion (RSD). As a comparison, we also consider the tomographic spherical harmonic (TSH) analysis of galaxy samples with different bin sizes. Assuming galaxy samples that mimic a few future surveys, we perform Fisher forecasts using linear modes for $f_{\rm NL}$ and the growth rate exponent $γ$, marginalized over standard $Λ$ cold dark matter ($Λ$CDM) cosmological parameters and two nuisance parameters that account for clustering bias and magnification bias. Compared to TSH analysis using only one bin, SFB analysis could improve $σ(f_{\rm NL})$ by factors 3 to 12 thanks to large radial modes. With future wide-field and high-redshift photometric surveys like the LSST, the constraint $σ(f_{\rm NL}) < 1$ could be achieved using linear angular multipoles up to $\ell_{\rm min}\simeq 20$. Compared to using galaxy auto-power spectra only, joint analyses with CMB lensing could improve $σ(γ)$ by factors 2 to 5 by reducing degeneracies with other parameters, especially the clustering bias. For future spectroscopic surveys like the DESI or $\textit{Euclid}$, using linear scales, $γ$ could be constrained to $3\,\%$ precision assuming the GR fiducial value.

astro-ph.CO↗
arXiv2021

Explaining COVID-19 and Thoracic Pathology Model Predictions by Identifying Informative Input Features

Neural networks have demonstrated remarkable performance in classification and regression tasks on chest X-rays. In order to establish trust in the clinical routine, the networks' prediction mechanism needs to be interpretable. One principal approach to interpretation is feature attribution. Feature attribution methods identify the importance of input features for the output prediction. Building on Information Bottleneck Attribution (IBA) method, for each prediction we identify the chest X-ray regions that have high mutual information with the network's output. Original IBA identifies input regions that have sufficient predictive information. We propose Inverse IBA to identify all informative regions. Thus all predictive cues for pathologies are highlighted on the X-rays, a desirable property for chest X-ray diagnosis. Moreover, we propose Regression IBA for explaining regression models. Using Regression IBA we observe that a model trained on cumulative severity score labels implicitly learns the severity of different X-ray regions. Finally, we propose Multi-layer IBA to generate higher resolution and more detailed attribution/saliency maps. We evaluate our methods using both human-centric (ground-truth-based) interpretability metrics, and human-independent feature importance metrics on NIH Chest X-ray8 and BrixIA datasets. The Code is publicly available.

eess.IV↗
arXiv2020

Testing General Relativity on cosmological scales at redshift z ~ 1.5 with quasar and CMB lensing

We test general relativity (GR) at the effective redshift $\bar{z} \sim 1.5$ by estimating the statistic $E_G$, a probe of gravity, on cosmological scales $19 - 190\,h^{-1}{\rm Mpc}$. This is the highest-redshift and largest-scale estimation of $E_G$ so far. We use the quasar sample with redshifts $0.8 < z < 2.2$ from Sloan Digital Sky Survey IV extended Baryon Oscillation Spectroscopic Survey (eBOSS) Data Release 16 (DR16) as the large-scale structure (LSS) tracer, for which the angular power spectrum $C_\ell^{qq}$ and the redshift-space distortion (RSD) parameter $β$ are estimated. By cross correlating with the $\textit{Planck}$ 2018 cosmic microwave background (CMB) lensing map, we detect the angular cross-power spectrum $C_\ell^{κq}$ signal at $12\,σ$ significance. Both jackknife resampling and simulations are used to estimate the covariance matrix (CM) of $E_G$ at $5$ bins covering different scales, with the later preferred for its better constraints on the covariances. We find $E_G$ estimates agree with the GR prediction at $1\,σ$ level over all these scales. With the CM estimated with $300$ simulations, we report a best-fit scale-averaged estimate of $E_G(\bar{z})=0.30\pm 0.05$, which is in line with the GR prediction $E_G^{\rm GR}(\bar{z})=0.33$ with $\textit{Planck}$ 2018 CMB+BAO matter density fraction $Ω_{\rm m}=0.31$. The statistical errors of $E_G$ with future LSS surveys at similar redshifts will be reduced by an order of magnitude, which makes it possible to constrain modified gravity models.

astro-ph.CO↗
arXiv2020

The Completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: Large-scale Structure Catalogs for Cosmological Analysis

We present large-scale structure catalogs from the completed extended Baryon Oscillation Spectroscopic Survey (eBOSS). Derived from Sloan Digital Sky Survey (SDSS) -IV Data Release 16 (DR16), these catalogs provide the data samples, corrected for observational systematics, and random positions sampling the survey selection function. Combined, they allow large-scale clustering measurements suitable for testing cosmological models. We describe the methods used to create these catalogs for the eBOSS DR16 Luminous Red Galaxy (LRG) and Quasar samples. The quasar catalog contains 343,708 redshifts with $0.8 < z < 2.2$ over 4,808\,deg$^2$. We combine 174,816 eBOSS LRG redshifts over 4,242\,deg$^2$ in the redshift interval $0.6 < z < 1.0$ with SDSS-III BOSS LRGs in the same redshift range to produce a combined sample of 377,458 galaxy redshifts distributed over 9,493\,deg$^2$. Improved algorithms for estimating redshifts allow that 98 per cent of LRG observations result in a successful redshift, with less than one per cent catastrophic failures ($Δz > 1000$ ${\rm km~s}^{-1}$). For quasars, these rates are 95 and 2 per cent (with $Δz > 3000$ ${\rm km~s}^{-1}$). We apply corrections for trends between the number densities of our samples and the properties of the imaging and spectroscopic data. For example, the quasar catalog obtains a $χ^2$/DoF$= 776/10$ for a null test against imaging depth before corrections and a $χ^2$/DoF$=6/8$ after. The catalogs, combined with careful consideration of the details of their construction found here-in, allow companion papers to present cosmological results with negligible impact from observational systematic uncertainties.

astro-ph.CO↗
arXiv2019

Prognostic Value of Transfer Learning Based Features in Resectable Pancreatic Ductal Adenocarcinoma

Pancreatic Ductal Adenocarcinoma (PDAC) is one of the most aggressive cancers with an extremely poor prognosis. Radiomics has shown prognostic ability in multiple types of cancer including PDAC. However, the prognostic value of traditional radiomics pipelines, which are based on hand-crafted radiomic features alone is limited. Convolutional neural networks (CNNs) have been shown to outperform these feature-based models in computer vision tasks. However, training a CNN from scratch needs a large sample size which is not feasible in most medical imaging studies. As an alternative solution, CNN-based transfer learning has shown potential for achieving reasonable performance using small datasets. In this work, we developed and validated a CNN-based transfer learning approach for prognostication of PDAC patients for overall survival using two independent resectable PDAC cohorts. The proposed deep transfer learning model for prognostication of PDAC achieved the area under the receiver operating characteristic curve of 0.74, which was significantly higher than that of the traditional radiomics model (0.56) as well as a CNN model trained from scratch (0.50). These results suggest that deep transfer learning may significantly improve prognosis performance using small datasets in medical imaging.

q-bio.QM↗