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Yulong Li

Publications and source records attributed to Yulong Li.

At least 37 records · Page 2Linked to original sources
arXiv2026

ClinCoT: Clinical-Aware Visual Chain-of-Thought for Medical Vision Language Models

Medical Vision-Language Models have shown promising potential in clinical decision support, yet they remain prone to factual hallucinations due to insufficient grounding in localized pathological evidence. Existing medical alignment methods primarily operate at the response level through preference optimization, improving output correctness but leaving intermediate reasoning weakly connected to visual regions. Although chain-of-thought (CoT) enhances multimodal reasoning, it remains largely text-centric, limiting effective integration of clinical visual cues. To address this gap, we propose ClinCoT, a clinical-aware visual chain-of-thought framework that transforms preference optimization from response-level correction to visual-driven reasoning. We introduce an automatic data generation pipeline that constructs clinically grounded preference pairs through reasoning with hypotheses-driven region proposals. Multiple Med-LLMs evaluators rank and assign scores to each response, and these rankings serve as supervision to train the target model. We further introduce a scoring-based margin-aware optimization strategy that incorporates both preference ranking and score difference to refine region-level reasoning trajectories. To maintain alignment as the model's policy evolves during training, we adopt an iterative learning scheme that dynamically regenerates preference data. Extensive experiments on three medical VQA and report generation benchmarks demonstrate that ClinCoT consistently improves factual grounding and achieves superior performance compared with existing preference-based alignment methods.

cs.CV↗
arXiv2026

DoAtlas-1: A Causal Compilation Paradigm for Clinical AI

Medical foundation models generate narrative explanations but cannot quantify intervention effects, detect evidence conflicts, or validate literature claims, limiting clinical auditability. We propose causal compilation, a paradigm that transforms medical evidence from narrative text into executable code. The paradigm standardizes heterogeneous research evidence into structured estimand objects, each explicitly specifying intervention contrast, effect scale, time horizon, and target population, supporting six executable causal queries: do-calculus, counterfactual reasoning, temporal trajectories, heterogeneous effects, mechanistic decomposition, and joint interventions. We instantiate this paradigm in DoAtlas-1, compiling 1,445 effect kernels from 754 studies through effect standardization, conflict-aware graph construction, and real-world validation (Human Phenotype Project, 10,000 participants). The system achieves 98.5% canonicalization accuracy and 80.5% query executability. This paradigm shifts medical AI from text generation to executable, auditable, and verifiable causal reasoning.

cs.AI↗
arXiv2026

DreamHome-Pano: Design-Aware and Conflict-Free Panoramic Interior Generation

In modern interior design, the generation of personalized spaces frequently necessitates a delicate balance between rigid architectural structural constraints and specific stylistic preferences. However, existing multi-condition generative frameworks often struggle to harmonize these inputs, leading to "condition conflicts" where stylistic attributes inadvertently compromise the geometric precision of the layout. To address this challenge, we present DreamHome-Pano, a controllable panoramic generation framework designed for high-fidelity interior synthesis. Our approach introduces a Prompt-LLM that serves as a semantic bridge, effectively translating layout constraints and style references into professional descriptive prompts to achieve precise cross-modal alignment. To safeguard architectural integrity during the generative process, we develop a Conflict-Free Control architecture that incorporates structural-aware geometric priors and a multi-condition decoupling strategy, effectively suppressing stylistic interference from eroding the spatial layout. Furthermore, we establish a comprehensive panoramic interior benchmark alongside a multi-stage training pipeline, encompassing progressive Supervised Fine-Tuning (SFT) and Reinforcement Learning (RL). Experimental results demonstrate that DreamHome-Pano achieves a superior balance between aesthetic quality and structural consistency, offering a robust and professional-grade solution for panoramic interior visualization.

cs.CV↗
arXiv2026

FloorplanVLM: A Vision-Language Model for Floorplan Vectorization

Converting raster floorplans into engineering-grade vector graphics is challenging due to complex topology and strict geometric constraints. To address this, we present FloorplanVLM, a unified framework that reformulates floorplan vectorization as an image-conditioned sequence modeling task. Unlike pixel-based methods that rely on fragile heuristics or query-based transformers that generate fragmented rooms, our model directly outputs structured JSON sequences representing the global topology. This 'pixels-to-sequence' paradigm enables the precise and holistic constraint satisfaction of complex geometries, such as slanted walls and curved arcs. To support this data-hungry approach, we introduce a scalable data engine: we construct a large-scale dataset (Floorplan-2M) and a high-fidelity subset (Floorplan-HQ-300K) to balance geometric diversity and pixel-level precision. We then employ a progressive training strategy, using Supervised Fine-Tuning (SFT) for structural grounding and quality annealing, followed by Group Relative Policy Optimization (GRPO) for strict geometric alignment. To standardize evaluation on complex layouts, we establish and open-source FPBench-2K. Evaluated on this rigorous benchmark, FloorplanVLM demonstrates exceptional structural validity, achieving $\textbf{92.52%}$ external-wall IoU and robust generalization across non-Manhattan architectures.

cs.CV↗
arXiv2026

DeepGB-TB: A Risk-Balanced Cross-Attention Gradient-Boosted Convolutional Network for Rapid, Interpretable Tuberculosis Screening

Large-scale tuberculosis (TB) screening is limited by the high cost and operational complexity of traditional diagnostics, creating a need for artificial-intelligence solutions. We propose DeepGB-TB, a non-invasive system that instantly assigns TB risk scores using only cough audio and basic demographic data. The model couples a lightweight one-dimensional convolutional neural network for audio processing with a gradient-boosted decision tree for tabular features. Its principal innovation is a Cross-Modal Bidirectional Cross-Attention module (CM-BCA) that iteratively exchanges salient cues between modalities, emulating the way clinicians integrate symptoms and risk factors. To meet the clinical priority of minimizing missed cases, we design a Tuberculosis Risk-Balanced Loss (TRBL) that places stronger penalties on false-negative predictions, thereby reducing high-risk misclassifications. DeepGB-TB is evaluated on a diverse dataset of 1,105 patients collected across seven countries, achieving an AUROC of 0.903 and an F1-score of 0.851, representing a new state of the art. Its computational efficiency enables real-time, offline inference directly on common mobile devices, making it ideal for low-resource settings. Importantly, the system produces clinically validated explanations that promote trust and adoption by frontline health workers. By coupling AI innovation with public-health requirements for speed, affordability, and reliability, DeepGB-TB offers a tool for advancing global TB control.

cs.LG↗
arXiv2026

LMK > CLS: Landmark Pooling for Dense Embeddings

Representation learning is central to many downstream tasks such as search, clustering, classification, and reranking. State-of-the-art sequence encoders typically collapse a variable-length token sequence to a single vector using a pooling operator, most commonly a special [CLS] token or mean pooling over token embeddings. In this paper, we identify systematic weaknesses of these pooling strategies: [CLS] tends to concentrate information toward the initial positions of the sequence and can under-represent distributed evidence, while mean pooling can dilute salient local signals, sometimes leading to worse short-context performance. To address these issues, we introduce Landmark (LMK) pooling, which partitions a sequence into chunks, inserts landmark tokens between chunks, and forms the final representation by mean-pooling the landmark token embeddings. This simple mechanism improves long-context extrapolation without sacrificing local salient features, at the cost of introducing a small number of special tokens. We empirically demonstrate that LMK pooling matches existing methods on short-context retrieval tasks and yields substantial improvements on long-context tasks, making it a practical and scalable alternative to existing pooling methods.

cs.CL↗
arXiv2026

Influence Guided Sampling for Domain Adaptation of Text Retrievers

General-purpose open-domain dense retrieval systems are usually trained with a large, eclectic mix of corpora and search tasks. How should these diverse corpora and tasks be sampled for training? Conventional approaches sample them uniformly, proportional to their instance population sizes, or depend on human-level expert supervision. It is well known that the training data sampling strategy can greatly impact model performance. However, how to find the optimal strategy has not been adequately studied in the context of embedding models. We propose Inf-DDS, a novel reinforcement learning driven sampling framework that adaptively reweighs training datasets guided by influence-based reward signals and is much more lightweight with respect to GPU consumption. Our technique iteratively refines the sampling policy, prioritizing datasets that maximize model performance on a target development set. We evaluate the efficacy of our sampling strategy on a wide range of text retrieval tasks, demonstrating strong improvements in retrieval performance and better adaptation compared to existing gradient-based sampling methods, while also being 1.5x to 4x cheaper in GPU compute. Our sampling strategy achieves a 5.03 absolute NDCG@10 improvement while training a multilingual bge-m3 model and an absolute NDCG@10 improvement of 0.94 while training all-MiniLM-L6-v2, even when starting from expert-assigned weights on a large pool of training datasets.

cs.IR↗
arXiv2026

Converting qubit relaxation into erasures with a single fluxonium

Qubits that experience predominantly erasure errors offer distinct advantages for fault-tolerant operation. Indeed, dual-rail encoded erasure qubits in superconducting cavities and transmons have demonstrated high-fidelity operations by converting physical-qubit relaxation into logical-qubit erasures, but this comes at the cost of increased hardware overhead and circuit complexity. Here, we address these limitations by realizing erasure conversion in a single fluxonium operated at zero flux, where the logical state is encoded in its 0-2 subspace. A single, carefully engineered resonator provides both mid-circuit erasure detection and end-of-line (EOL) logical measurement. Post-selection on non-erasure outcomes results in more than four-fold increase of the logical lifetime, from $193~μ$s to $869~μ$s. Finally, we characterize measurement-induced logical dephasing as a function of measurement power and frequency, and infer that each erasure check contributes a negligible error of $7.2\times 10^{-5}$. These results establish integer-fluxonium as a promising, resource-efficient platform for erasure-based error mitigation, without requiring additional hardware.

quant-ph↗
arXiv2026

SAM-aware Test-time Adaptation for Universal Medical Image Segmentation

Leveraging the Segment Anything Model (SAM) for medical image segmentation remains challenging due to its limited adaptability across diverse medical domains. Although fine-tuned variants, such as MedSAM, improve performance in scenarios similar to the training modalities or organs, they may lack generalizability to unseen data. To overcome this limitation, we propose SAM-aware Test-time Adaptation (SAM-TTA), a lightweight and flexible framework that preserves SAM's inherent generalization ability while enhancing segmentation accuracy for medical images. SAM-TTA tackles two major challenges: (1) input-level discrepancy caused by channel mismatches between natural and medical images, and (2) semantic-level discrepancy due to different object characteristics in natural versus medical images (e.g., with clear boundaries vs. ambiguous structures). To this end, we introduce two complementary components: a self-adaptive Bezier Curve-based Transformation (SBCT), which maps single-channel medical images into SAM-compatible three-channel images via a few learnable parameters to be optimized at test time; and IoU-guided Multi-scale Adaptation (IMA), which leverages SAM's intrinsic IoU scores to enforce high output confidence, dual-scale prediction consistency, and intermediate feature consistency, to improve semantic-level alignments. Extensive experiments on eight public medical image segmentation tasks, covering six grayscale and two color (endoscopic) tasks, demonstrate that SAM-TTA consistently outperforms state-of-the-art test-time adaptation methods. Notably, on six grayscale datasets, SAM-TTA even surpasses fully fine-tuned models, achieving significant Dice improvements (i.e., average 4.8% and 7.4% gains over MedSAM and SAM-Med2D) and establishing a new paradigm for universal medical image segmentation. Code is available at https://github.com/JianghaoWu/SAM-TTA.

cs.CV↗
arXiv2025

PRISM: A Personality-Driven Multi-Agent Framework for Social Media Simulation

Traditional agent-based models (ABMs) of opinion dynamics often fail to capture the psychological heterogeneity driving online polarization due to simplistic homogeneity assumptions. This limitation obscures the critical interplay between individual cognitive biases and information propagation, thereby hindering a mechanistic understanding of how ideological divides are amplified. To address this challenge, we introduce the Personality-Refracted Intelligent Simulation Model (PRISM), a hybrid framework coupling stochastic differential equations (SDE) for continuous emotional evolution with a personality-conditional partially observable Markov decision process (PC-POMDP) for discrete decision-making. In contrast to continuous trait approaches, PRISM assigns distinct Myers-Briggs Type Indicator (MBTI) based cognitive policies to multimodal large language model (MLLM) agents, initialized via data-driven priors from large-scale social media datasets. PRISM achieves superior personality consistency aligned with human ground truth, significantly outperforming standard homogeneous and Big Five benchmarks. This framework effectively replicates emergent phenomena such as rational suppression and affective resonance, offering a robust tool for analyzing complex social media ecosystems.

cs.CL↗
arXiv2025

Predicting Friction under Vastly Different Lubrication Scenarios

Friction is ubiquitous in daily life, from nanoscale machines to large engineering components. By probing the intricate interplay between system parameters and frictional behavior, scientists seek to unveil the underlying mechanisms that enable prediction and control of friction -- an essential step toward carbon neutrality. Yet, reproducing frictional behavior in experiments is notoriously difficult. Here, we show that this challenge stems from the extreme sensitivity of tribological systems to tiny variations, e.g. in surface topography, typically presumed well-controlled. Even after meticulous surface preparation to semiconductor-industry standards and curtailing misalignment-induced oscillations, subtle variations remain and interact. In turn, such minute initial differences lead to statistically significant variations in friction and wear, giving rise to system-level chaotic behavior. Yet, by leveraging mid-scale features of surface topography and misalignment-induced oscillations -- information often filtered out or overlooked -- we established a model that accurately predicts high-friction regions under vastly different lubrication scenarios, with its performance further enhanced by machine learning.

cond-mat.mtrl-sci↗
arXiv2025

Resource Efficient Sleep Staging via Multi-Level Masking and Prompt Learning

Automatic sleep staging plays a vital role in assessing sleep quality and diagnosing sleep disorders. Most existing methods rely heavily on long and continuous EEG recordings, which poses significant challenges for data acquisition in resource-constrained systems, such as wearable or home-based monitoring systems. In this paper, we propose the task of resource-efficient sleep staging, which aims to reduce the amount of signal collected per sleep epoch while maintaining reliable classification performance. To solve this task, we adopt the masking and prompt learning strategy and propose a novel framework called Mask-Aware Sleep Staging (MASS). Specifically, we design a multi-level masking strategy to promote effective feature modeling under partial and irregular observations. To mitigate the loss of contextual information introduced by masking, we further propose a hierarchical prompt learning mechanism that aggregates unmasked data into a global prompt, serving as a semantic anchor for guiding both patch-level and epoch-level feature modeling. MASS is evaluated on four datasets, demonstrating state-of-the-art performance, especially when the amount of data is very limited. This result highlights its potential for efficient and scalable deployment in real-world low-resource sleep monitoring environments.

cs.LG↗
arXiv2025

Phenome-Wide Multi-Omics Integration Uncovers Distinct Archetypes of Human Aging

Aging is a highly complex and heterogeneous process that progresses at different rates across individuals, making biological age (BA) a more accurate indicator of physiological decline than chronological age. While previous studies have built aging clocks using single-omics data, they often fail to capture the full molecular complexity of human aging. In this work, we leveraged the Human Phenotype Project, a large-scale cohort of 10,000 adults aged 40-70 years, with extensive longitudinal profiling that includes clinical, behavioral, environmental, and multi-omics datasets spanning transcriptomics, lipidomics, metabolomics, and the microbiome. By employing advanced machine learning frameworks capable of modeling nonlinear biological dynamics, we developed and rigorously validated a multi-omics aging clock that robustly predicts diverse health outcomes and future disease risk. Unsupervised clustering of the integrated molecular profiles from multi-omics uncovered distinct biological subtypes of aging, revealing striking heterogeneity in aging trajectories and pinpointing pathway-specific alterations associated with different aging patterns. These findings demonstrate the power of multi-omics integration to decode the molecular landscape of aging and lay the groundwork for personalized healthspan monitoring and precision strategies to prevent age-related diseases.

q-bio.GN↗
arXiv2025

Few-Label Multimodal Modeling of SNP Variants and ECG Phenotypes Using Large Language Models for Cardiovascular Risk Stratification

Cardiovascular disease (CVD) risk stratification remains a major challenge due to its multifactorial nature and limited availability of high-quality labeled datasets. While genomic and electrophysiological data such as SNP variants and ECG phenotypes are increasingly accessible, effectively integrating these modalities in low-label settings is non-trivial. This challenge arises from the scarcity of well-annotated multimodal datasets and the high dimensionality of biological signals, which limit the effectiveness of conventional supervised models. To address this, we present a few-label multimodal framework that leverages large language models (LLMs) to combine genetic and electrophysiological information for cardiovascular risk stratification. Our approach incorporates a pseudo-label refinement strategy to adaptively distill high-confidence labels from weakly supervised predictions, enabling robust model fine-tuning with only a small set of ground-truth annotations. To enhance the interpretability, we frame the task as a Chain of Thought (CoT) reasoning problem, prompting the model to produce clinically relevant rationales alongside predictions. Experimental results demonstrate that the integration of multimodal inputs, few-label supervision, and CoT reasoning improves robustness and generalizability across diverse patient profiles. Experimental results using multimodal SNP variants and ECG-derived features demonstrated comparable performance to models trained on the full dataset, underscoring the promise of LLM-based few-label multimodal modeling for advancing personalized cardiovascular care.

q-bio.QM↗
arXiv2025

Towards Robust Visual Continual Learning with Multi-Prototype Supervision

Language-guided supervision, which utilizes a frozen semantic target from a Pretrained Language Model (PLM), has emerged as a promising paradigm for visual Continual Learning (CL). However, relying on a single target introduces two critical limitations: 1) semantic ambiguity, where a polysemous category name results in conflicting visual representations, and 2) intra-class visual diversity, where a single prototype fails to capture the rich variety of visual appearances within a class. To this end, we propose MuproCL, a novel framework that replaces the single target with multiple, context-aware prototypes. Specifically, we employ a lightweight LLM agent to perform category disambiguation and visual-modal expansion to generate a robust set of semantic prototypes. A LogSumExp aggregation mechanism allows the vision model to adaptively align with the most relevant prototype for a given image. Extensive experiments across various CL baselines demonstrate that MuproCL consistently enhances performance and robustness, establishing a more effective path for language-guided continual learning.

cs.CV↗
arXiv2025

Deep Reactive Policy: Learning Reactive Manipulator Motion Planning for Dynamic Environments

Generating collision-free motion in dynamic, partially observable environments is a fundamental challenge for robotic manipulators. Classical motion planners can compute globally optimal trajectories but require full environment knowledge and are typically too slow for dynamic scenes. Neural motion policies offer a promising alternative by operating in closed-loop directly on raw sensory inputs but often struggle to generalize in complex or dynamic settings. We propose Deep Reactive Policy (DRP), a visuo-motor neural motion policy designed for reactive motion generation in diverse dynamic environments, operating directly on point cloud sensory input. At its core is IMPACT, a transformer-based neural motion policy pretrained on 10 million generated expert trajectories across diverse simulation scenarios. We further improve IMPACT's static obstacle avoidance through iterative student-teacher finetuning. We additionally enhance the policy's dynamic obstacle avoidance at inference time using DCP-RMP, a locally reactive goal-proposal module. We evaluate DRP on challenging tasks featuring cluttered scenes, dynamic moving obstacles, and goal obstructions. DRP achieves strong generalization, outperforming prior classical and neural methods in success rate across both simulated and real-world settings. Video results and code available at https://deep-reactive-policy.com

cs.RO↗
arXiv2025

Granite Embedding R2 Models

We introduce the Granite Embedding R2 models, a comprehensive family of high-performance English encoder-based embedding models engineered for enterprise-scale dense retrieval applications. Building upon our first-generation release, these models deliver substantial improvements, including 16x expanded context length (8,192 tokens), state-of-the-art performance across diverse retrieval domains - text, code, long-document search, multi-turn conversational, and tabular data - and measurable speed advantages of 19-44\% over leading competitors while maintaining superior accuracy. Our release encompasses both bi-encoder and cross-encoder architectures, featuring a highly effective 22-layer retriever model and its efficient 12-layer counterpart, alongside a high-quality reranker model, all trained exclusively on enterprise-appropriate data with comprehensive governance oversight. The models demonstrate exceptional versatility across standard benchmarks, IBM-developed evaluation suites, and real-world enterprise use cases, establishing new performance standards for open-source embedding models. In an era where retrieval speed and accuracy are paramount for competitive advantage, the Granite R2 models deliver a compelling combination of cutting-edge performance, enterprise-ready licensing, and transparent data provenance that organizations require for mission-critical deployments. All models are publicly available under the Apache 2.0 license at https://huggingface.co/collections/ibm-granite, enabling unrestricted research and commercial use.

cs.CL↗
arXiv2025

A Machine Learning Approach to Predict Biological Age and its Longitudinal Drivers

Predicting an individual's aging trajectory is a central challenge in preventative medicine and bioinformatics. While machine learning models can predict chronological age from biomarkers, they often fail to capture the dynamic, longitudinal nature of the aging process. In this work, we developed and validated a machine learning pipeline to predict age using a longitudinal cohort with data from two distinct time periods (2019-2020 and 2021-2022). We demonstrate that a model using only static, cross-sectional biomarkers has limited predictive power when generalizing to future time points. However, by engineering novel features that explicitly capture the rate of change (slope) of key biomarkers over time, we significantly improved model performance. Our final LightGBM model, trained on the initial wave of data, successfully predicted age in the subsequent wave with high accuracy ($R^2 = 0.515$ for males, $R^2 = 0.498$ for females), significantly outperforming both traditional linear models and other tree-based ensembles. SHAP analysis of our successful model revealed that the engineered slope features were among the most important predictors, highlighting that an individual's health trajectory, not just their static health snapshot, is a key determinant of biological age. Our framework paves the way for clinical tools that dynamically track patient health trajectories, enabling early intervention and personalized prevention strategies for age-related diseases.

cs.LG↗