arXiv subjects

Yulong Li

Publications and source records attributed to Yulong Li.

At least 55 records · Page 3Linked to original sources

arXiv2025

How Effectively Can Large Language Models Connect SNP Variants and ECG Phenotypes for Cardiovascular Risk Prediction?

Cardiovascular disease (CVD) prediction remains a tremendous challenge due to its multifactorial etiology and global burden of morbidity and mortality. Despite the growing availability of genomic and electrophysiological data, extracting biologically meaningful insights from such high-dimensional, noisy, and sparsely annotated datasets remains a non-trivial task. Recently, LLMs has been applied effectively to predict structural variations in biological sequences. In this work, we explore the potential of fine-tuned LLMs to predict cardiac diseases and SNPs potentially leading to CVD risk using genetic markers derived from high-throughput genomic profiling. We investigate the effect of genetic patterns associated with cardiac conditions and evaluate how LLMs can learn latent biological relationships from structured and semi-structured genomic data obtained by mapping genetic aspects that are inherited from the family tree. By framing the problem as a Chain of Thought (CoT) reasoning task, the models are prompted to generate disease labels and articulate informed clinical deductions across diverse patient profiles and phenotypes. The findings highlight the promise of LLMs in contributing to early detection, risk assessment, and ultimately, the advancement of personalized medicine in cardiac care.

cs.LG↗

arXiv2025

TrackAny3D: Transferring Pretrained 3D Models for Category-unified 3D Point Cloud Tracking

3D LiDAR-based single object tracking (SOT) relies on sparse and irregular point clouds, posing challenges from geometric variations in scale, motion patterns, and structural complexity across object categories. Current category-specific approaches achieve good accuracy but are impractical for real-world use, requiring separate models for each category and showing limited generalization. To tackle these issues, we propose TrackAny3D, the first framework to transfer large-scale pretrained 3D models for category-agnostic 3D SOT. We first integrate parameter-efficient adapters to bridge the gap between pretraining and tracking tasks while preserving geometric priors. Then, we introduce a Mixture-of-Geometry-Experts (MoGE) architecture that adaptively activates specialized subnetworks based on distinct geometric characteristics. Additionally, we design a temporal context optimization strategy that incorporates learnable temporal tokens and a dynamic mask weighting module to propagate historical information and mitigate temporal drift. Experiments on three commonly-used benchmarks show that TrackAny3D establishes new state-of-the-art performance on category-agnostic 3D SOT, demonstrating strong generalization and competitiveness. We hope this work will enlighten the community on the importance of unified models and further expand the use of large-scale pretrained models in this field.

cs.CV↗

arXiv2025

A Library of LLM Intrinsics for Retrieval-Augmented Generation

In the developer community for large language models (LLMs), there is not yet a clean pattern analogous to a software library, to support very large scale collaboration. Even for the commonplace use case of Retrieval-Augmented Generation (RAG), it is not currently possible to write a RAG application against a well-defined set of APIs that are agreed upon by different LLM providers. Inspired by the idea of compiler intrinsics, we propose some elements of such a concept through introducing a library of LLM Intrinsics for RAG. An LLM intrinsic is defined as a capability that can be invoked through a well-defined API that is reasonably stable and independent of how the LLM intrinsic itself is implemented. The intrinsics in our library are released as LoRA adapters on HuggingFace, and through a software interface with clear structured input/output characteristics on top of vLLM as an inference platform, accompanied in both places with documentation and code. This article describes the intended usage, training details, and evaluations for each intrinsic, as well as compositions of multiple intrinsics.

cs.AI↗

arXiv2025

Mitigating state transition errors during readout with a synchronized flux pulse

State transitions during qubit measurements are extremely detrimental to quantum tasks that rely on repeated measurements, such as quantum error correction. These state transitions can occur when excessive measurement power leads to qubit excitations outside its computational space. Alternatively, the qubit state can decay rapidly when the measurement protocol inadvertently couples the qubit to lossy modes such as two-level systems (TLSs). We experimentally verify the impact of these TLSs in qubit readout by measuring the transition errors at different qubit flux bias. Because such state transitions during measurements are often localized in frequency space, we demonstrate the ability to avoid them during a fluxonium readout by exploiting the qubit's flux-tunability. By synchronizing the flux bias with the readout photon dynamics, we obtain an optimal readout fidelity of 99 % (98.4 %) in 1 us (0.5 us) integration time. Our work advances the understanding of state transitions in superconducting circuit measurements and demonstrates the potential of fluxonium qubits to achieve fast high-fidelity readout.

quant-ph↗

arXiv2025

Confidence-Aware Self-Distillation for Multimodal Sentiment Analysis with Incomplete Modalities

Multimodal sentiment analysis (MSA) aims to understand human sentiment through multimodal data. In real-world scenarios, practical factors often lead to uncertain modality missingness. Existing methods for handling modality missingness are based on data reconstruction or common subspace projections. However, these methods neglect the confidence in multimodal combinations and impose constraints on intra-class representation, hindering the capture of modality-specific information and resulting in suboptimal performance. To address these challenges, we propose a Confidence-Aware Self-Distillation (CASD) strategy that effectively incorporates multimodal probabilistic embeddings via a mixture of Student's $t$-distributions, enhancing its robustness by incorporating confidence and accommodating heavy-tailed properties. This strategy estimates joint distributions with uncertainty scores and reduces uncertainty in the student network by consistency distillation. Furthermore, we introduce a reparameterization representation module that facilitates CASD in robust multimodal learning by sampling embeddings from the joint distribution for the prediction module to calculate the task loss. As a result, the directional constraint from the loss minimization is alleviated by the sampled representation. Experimental results on three benchmark datasets demonstrate that our method achieves state-of-the-art performance.

cs.LG↗

arXiv2025

Towards Dynamic 3D Reconstruction of Hand-Instrument Interaction in Ophthalmic Surgery

Accurate 3D reconstruction of hands and instruments is critical for vision-based analysis of ophthalmic microsurgery, yet progress has been hampered by the lack of realistic, large-scale datasets and reliable annotation tools. In this work, we introduce OphNet-3D, the first extensive RGB-D dynamic 3D reconstruction dataset for ophthalmic surgery, comprising 41 sequences from 40 surgeons and totaling 7.1 million frames, with fine-grained annotations of 12 surgical phases, 10 instrument categories, dense MANO hand meshes, and full 6-DoF instrument poses. To scalably produce high-fidelity labels, we design a multi-stage automatic annotation pipeline that integrates multi-view data observation, data-driven motion prior with cross-view geometric consistency and biomechanical constraints, along with a combination of collision-aware interaction constraints for instrument interactions. Building upon OphNet-3D, we establish two challenging benchmarks-bimanual hand pose estimation and hand-instrument interaction reconstruction-and propose two dedicated architectures: H-Net for dual-hand mesh recovery and OH-Net for joint reconstruction of two-hand-two-instrument interactions. These models leverage a novel spatial reasoning module with weak-perspective camera modeling and collision-aware center-based representation. Both architectures outperform existing methods by substantial margins, achieving improvements of over 2mm in Mean Per Joint Position Error (MPJPE) and up to 23% in ADD-S metrics for hand and instrument reconstruction, respectively.

cs.CV↗

arXiv2025

ScalingNoise: Scaling Inference-Time Search for Generating Infinite Videos

Video diffusion models (VDMs) facilitate the generation of high-quality videos, with current research predominantly concentrated on scaling efforts during training through improvements in data quality, computational resources, and model complexity. However, inference-time scaling has received less attention, with most approaches restricting models to a single generation attempt. Recent studies have uncovered the existence of "golden noises" that can enhance video quality during generation. Building on this, we find that guiding the scaling inference-time search of VDMs to identify better noise candidates not only evaluates the quality of the frames generated in the current step but also preserves the high-level object features by referencing the anchor frame from previous multi-chunks, thereby delivering long-term value. Our analysis reveals that diffusion models inherently possess flexible adjustments of computation by varying denoising steps, and even a one-step denoising approach, when guided by a reward signal, yields significant long-term benefits. Based on the observation, we proposeScalingNoise, a plug-and-play inference-time search strategy that identifies golden initial noises for the diffusion sampling process to improve global content consistency and visual diversity. Specifically, we perform one-step denoising to convert initial noises into a clip and subsequently evaluate its long-term value, leveraging a reward model anchored by previously generated content. Moreover, to preserve diversity, we sample candidates from a tilted noise distribution that up-weights promising noises. In this way, ScalingNoise significantly reduces noise-induced errors, ensuring more coherent and spatiotemporally consistent video generation. Extensive experiments on benchmark datasets demonstrate that the proposed ScalingNoise effectively improves long video generation.

cs.LG↗

arXiv2025

TAGS: A Test-Time Generalist-Specialist Framework with Retrieval-Augmented Reasoning and Verification

Recent advances such as Chain-of-Thought prompting have significantly improved large language models (LLMs) in zero-shot medical reasoning. However, prompting-based methods often remain shallow and unstable, while fine-tuned medical LLMs suffer from poor generalization under distribution shifts and limited adaptability to unseen clinical scenarios. To address these limitations, we present TAGS, a test-time framework that combines a broadly capable generalist with a domain-specific specialist to offer complementary perspectives without any model fine-tuning or parameter updates. To support this generalist-specialist reasoning process, we introduce two auxiliary modules: a hierarchical retrieval mechanism that provides multi-scale exemplars by selecting examples based on both semantic and rationale-level similarity, and a reliability scorer that evaluates reasoning consistency to guide final answer aggregation. TAGS achieves strong performance across nine MedQA benchmarks, boosting GPT-4o accuracy by 13.8%, DeepSeek-R1 by 16.8%, and improving a vanilla 7B model from 14.1% to 23.9%. These results surpass several fine-tuned medical LLMs, without any parameter updates. The code will be available at https://github.com/JianghaoWu/TAGS.

cs.CL↗

arXiv2025

LLM-Enhanced Feature Engineering for Multi-Factor Electricity Price Predictions

Accurately forecasting electricity price volatility is crucial for effective risk management and decision-making. Traditional forecasting models often fall short in capturing the complex, non-linear dynamics of electricity markets, particularly when external factors like weather conditions and market volatility are involved. These limitations hinder their ability to provide reliable predictions in markets with high volatility, such as the New South Wales (NSW) electricity market. To address these challenges, we introduce FAEP, a Feature-Augmented Electricity Price Prediction framework. FAEP leverages Large Language Models (LLMs) combined with advanced feature engineering to enhance prediction accuracy. By incorporating external features such as weather data and price volatility jumps, and utilizing Retrieval-Augmented Generation (RAG) for effective feature extraction, FAEP overcomes the shortcomings of traditional approaches. A hybrid XGBoost-LSTM model in FAEP further refines these augmented features, resulting in a more robust prediction framework. Experimental results demonstrate that FAEP achieves state-of-art (SOTA) performance compared to other electricity price prediction models in the Australian New South Wale electricity market, showcasing the efficiency of LLM-enhanced feature engineering and hybrid machine learning architectures.

cs.CE↗

arXiv2025

FACTR: Force-Attending Curriculum Training for Contact-Rich Policy Learning

Many contact-rich tasks humans perform, such as box pickup or rolling dough, rely on force feedback for reliable execution. However, this force information, which is readily available in most robot arms, is not commonly used in teleoperation and policy learning. Consequently, robot behavior is often limited to quasi-static kinematic tasks that do not require intricate force-feedback. In this paper, we first present a low-cost, intuitive, bilateral teleoperation setup that relays external forces of the follower arm back to the teacher arm, facilitating data collection for complex, contact-rich tasks. We then introduce FACTR, a policy learning method that employs a curriculum which corrupts the visual input with decreasing intensity throughout training. The curriculum prevents our transformer-based policy from over-fitting to the visual input and guides the policy to properly attend to the force modality. We demonstrate that by fully utilizing the force information, our method significantly improves generalization to unseen objects by 43\% compared to baseline approaches without a curriculum. Video results, codebases, and instructions at https://jasonjzliu.com/factr/

cs.RO↗

arXiv2025

Rhythm of Opinion: A Hawkes-Graph Framework for Dynamic Propagation Analysis

The rapid development of social media has significantly reshaped the dynamics of public opinion, resulting in complex interactions that traditional models fail to effectively capture. To address this challenge, we propose an innovative approach that integrates multi-dimensional Hawkes processes with Graph Neural Network, modeling opinion propagation dynamics among nodes in a social network while considering the intricate hierarchical relationships between comments. The extended multi-dimensional Hawkes process captures the hierarchical structure, multi-dimensional interactions, and mutual influences across different topics, forming a complex propagation network. Moreover, recognizing the lack of high-quality datasets capable of comprehensively capturing the evolution of public opinion dynamics, we introduce a new dataset, VISTA. It includes 159 trending topics, corresponding to 47,207 posts, 327,015 second-level comments, and 29,578 third-level comments, covering diverse domains such as politics, entertainment, sports, health, and medicine. The dataset is annotated with detailed sentiment labels across 11 categories and clearly defined hierarchical relationships. When combined with our method, it offers strong interpretability by linking sentiment propagation to the comment hierarchy and temporal evolution. Our approach provides a robust baseline for future research.

cs.SI↗

arXiv2025

Beyond Words: AuralLLM and SignMST-C for Sign Language Production and Bidirectional Accessibility

Sign language is the primary communication mode for 72 million hearing-impaired individuals worldwide, necessitating effective bidirectional Sign Language Production and Sign Language Translation systems. However, functional bidirectional systems require a unified linguistic environment, hindered by the lack of suitable unified datasets, particularly those providing the necessary pose information for accurate Sign Language Production (SLP) evaluation. Concurrently, current SLP evaluation methods like back-translation ignore pose accuracy, and high-quality coordinated generation remains challenging. To create this crucial environment and overcome these challenges, we introduce CNText2Sign and CNSign, which together constitute the first unified dataset aimed at supporting bidirectional accessibility systems for Chinese sign language; CNText2Sign provides 15,000 natural language-to-sign mappings and standardized skeletal keypoints for 8,643 vocabulary items supporting pose assessment. Building upon this foundation, we propose the AuraLLM model, which leverages a decoupled architecture with CNText2Sign's pose data for novel direct gesture accuracy assessment. The model employs retrieval augmentation and Cascading Vocabulary Resolution to handle semantic mapping and out-of-vocabulary words and achieves all-scenario production with controllable coordination of gestures and facial expressions via pose-conditioned video synthesis. Concurrently, our Sign Language Translation model SignMST-C employs targeted self-supervised pretraining for dynamic feature capture, achieving new SOTA results on PHOENIX2014-T with BLEU-4 scores up to 32.08. AuraLLM establishes a strong performance baseline on CNText2Sign with a BLEU-4 score of 50.41 under direct evaluation.

cs.CV↗

arXiv2025

MSWAL: 3D Multi-class Segmentation of Whole Abdominal Lesions Dataset

With the significantly increasing incidence and prevalence of abdominal diseases, there is a need to embrace greater use of new innovations and technology for the diagnosis and treatment of patients. Although deep-learning methods have notably been developed to assist radiologists in diagnosing abdominal diseases, existing models have the restricted ability to segment common lesions in the abdomen due to missing annotations for typical abdominal pathologies in their training datasets. To address the limitation, we introduce MSWAL, the first 3D Multi-class Segmentation of the Whole Abdominal Lesions dataset, which broadens the coverage of various common lesion types, such as gallstones, kidney stones, liver tumors, kidney tumors, pancreatic cancer, liver cysts, and kidney cysts. With CT scans collected from 694 patients (191,417 slices) of different genders across various scanning phases, MSWAL demonstrates strong robustness and generalizability. The transfer learning experiment from MSWAL to two public datasets, LiTS and KiTS, effectively demonstrates consistent improvements, with Dice Similarity Coefficient (DSC) increase of 3.00% for liver tumors and 0.89% for kidney tumors, demonstrating that the comprehensive annotations and diverse lesion types in MSWAL facilitate effective learning across different domains and data distributions. Furthermore, we propose Inception nnU-Net, a novel segmentation framework that effectively integrates an Inception module with the nnU-Net architecture to extract information from different receptive fields, achieving significant enhancement in both voxel-level DSC and region-level F1 compared to the cutting-edge public algorithms on MSWAL. Our dataset will be released after being accepted, and the code is publicly released at https://github.com/tiuxuxsh76075/MSWAL-.

eess.IV↗

arXiv2025

MMRC: A Large-Scale Benchmark for Understanding Multimodal Large Language Model in Real-World Conversation

Recent multimodal large language models (MLLMs) have demonstrated significant potential in open-ended conversation, generating more accurate and personalized responses. However, their abilities to memorize, recall, and reason in sustained interactions within real-world scenarios remain underexplored. This paper introduces MMRC, a Multi-Modal Real-world Conversation benchmark for evaluating six core open-ended abilities of MLLMs: information extraction, multi-turn reasoning, information update, image management, memory recall, and answer refusal. With data collected from real-world scenarios, MMRC comprises 5,120 conversations and 28,720 corresponding manually labeled questions, posing a significant challenge to existing MLLMs. Evaluations on 20 MLLMs in MMRC indicate an accuracy drop during open-ended interactions. We identify four common failure patterns: long-term memory degradation, inadequacies in updating factual knowledge, accumulated assumption of error propagation, and reluctance to say no. To mitigate these issues, we propose a simple yet effective NOTE-TAKING strategy, which can record key information from the conversation and remind the model during its responses, enhancing conversational capabilities. Experiments across six MLLMs demonstrate significant performance improvements.

cs.CL↗

arXiv2025

Granite Embedding Models

We introduce the Granite Embedding models, a family of encoder-based embedding models designed for retrieval tasks, spanning dense-retrieval and sparse retrieval architectures, with both English and Multilingual capabilities. This report provides the technical details of training these highly effective 12 layer embedding models, along with their efficient 6 layer distilled counterparts. Extensive evaluations show that the models, developed with techniques like retrieval oriented pretraining, contrastive finetuning, knowledge distillation, and model merging significantly outperform publicly available models of similar sizes on both internal IBM retrieval and search tasks, and have equivalent performance on widely used information retrieval benchmarks, while being trained on high-quality data suitable for enterprise use. We publicly release all our Granite Embedding models under the Apache 2.0 license, allowing both research and commercial use at https://huggingface.co/collections/ibm-granite.

cs.IR↗

arXiv2025

KD-MSLRT: Lightweight Sign Language Recognition Model Based on Mediapipe and 3D to 1D Knowledge Distillation

Artificial intelligence has achieved notable results in sign language recognition and translation. However, relatively few efforts have been made to significantly improve the quality of life for the 72 million hearing-impaired people worldwide. Sign language translation models, relying on video inputs, involves with large parameter sizes, making it time-consuming and computationally intensive to be deployed. This directly contributes to the scarcity of human-centered technology in this field. Additionally, the lack of datasets in sign language translation hampers research progress in this area. To address these, we first propose a cross-modal multi-knowledge distillation technique from 3D to 1D and a novel end-to-end pre-training text correction framework. Compared to other pre-trained models, our framework achieves significant advancements in correcting text output errors. Our model achieves a decrease in Word Error Rate (WER) of at least 1.4% on PHOENIX14 and PHOENIX14T datasets compared to the state-of-the-art CorrNet. Additionally, the TensorFlow Lite (TFLite) quantized model size is reduced to 12.93 MB, making it the smallest, fastest, and most accurate model to date. We have also collected and released extensive Chinese sign language datasets, and developed a specialized training vocabulary. To address the lack of research on data augmentation for landmark data, we have designed comparative experiments on various augmentation methods. Moreover, we performed a simulated deployment and prediction of our model on Intel platform CPUs and assessed the feasibility of deploying the model on other platforms.

cs.CY↗

arXiv2025

Multi-Purpose Architecture for Fast Reset and Protective Readout of Superconducting Qubits

The ability to fast reset a qubit state is crucial for quantum information processing. However, to actively reset a qubit requires engineering a pathway to interact with a dissipative bath, which often comes with the cost of reduced qubit protection from the environment. Here, we present a novel multi-purpose architecture that enables fast reset and protection of superconducting qubits during control and readout. In our design, two on-chip diplexers are connected by two transmission lines. The high-pass branch provides a flat passband for convenient allocation of readout resonators above the qubit frequencies, which is preferred for reducing measurement-induced state transitions. In the low-pass branch, we leverage a standing-wave mode below the maximum qubit frequency for a rapid reset. The qubits are located in the common stopband to inhibit dissipation during coherent operations. We demonstrate resetting a transmon qubit from its first excited state to the ground state in 100 ns, achieving a residual population of 2.7%. The reset time may be further shortened to 27 ns by exploiting the coherent population inversion effect. We further extend the technique to resetting the qubit from its second excited state. Our approach promises scalable implementation of fast reset and qubit protection during control and readout, adding to the toolbox of dissipation engineering.

quant-ph↗

arXiv2025

Decoding the Flow: CauseMotion for Emotional Causality Analysis in Long-form Conversations

Long-sequence causal reasoning seeks to uncover causal relationships within extended time series data but is hindered by complex dependencies and the challenges of validating causal links. To address the limitations of large-scale language models (e.g., GPT-4) in capturing intricate emotional causality within extended dialogues, we propose CauseMotion, a long-sequence emotional causal reasoning framework grounded in Retrieval-Augmented Generation (RAG) and multimodal fusion. Unlike conventional methods relying only on textual information, CauseMotion enriches semantic representations by incorporating audio-derived features-vocal emotion, emotional intensity, and speech rate-into textual modalities. By integrating RAG with a sliding window mechanism, it effectively retrieves and leverages contextually relevant dialogue segments, thus enabling the inference of complex emotional causal chains spanning multiple conversational turns. To evaluate its effectiveness, we constructed the first benchmark dataset dedicated to long-sequence emotional causal reasoning, featuring dialogues with over 70 turns. Experimental results demonstrate that the proposed RAG-based multimodal integrated approach, the efficacy of substantially enhances both the depth of emotional understanding and the causal inference capabilities of large-scale language models. A GLM-4 integrated with CauseMotion achieves an 8.7% improvement in causal accuracy over the original model and surpasses GPT-4o by 1.2%. Additionally, on the publicly available DiaASQ dataset, CauseMotion-GLM-4 achieves state-of-the-art results in accuracy, F1 score, and causal reasoning accuracy.

cs.CL↗