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Yun Liu

Publications and source records attributed to Yun Liu.

At least 163 records · Page 9Linked to original sources
arXiv2024

Message-Passing Receiver for OCDM over Multi-Lag Multi-Doppler Channels

As a new candidate waveform for the next generation wireless communications, orthogonal chirp division multiplexing (OCDM) has attracted growing attention for its ability to achieve full diversity in uncoded transmission, and its robustness to narrow-band interference or impulsive noise. Under high mobility channels with multiple lags and multiple Doppler-shifts (MLMD), the signal suffers doubly selective (DS) fadings in time and frequency domain, and data symbols modulated on orthogonal chirps are interfered by each other. To address the problem of symbol detection of OCDM over MLMD channel, under the assumption that path attenuation factors, delays, and Doppler shifts of the channel are available, we first derive the closed-form channel matrix in Fresnel domain, and then propose a low-complexity method to approximate it as a sparse matrix. Based on the approximated Fresnel-domain channel, we propose a message passing (MP) based detector to estimate the transmit symbols iteratively. Finally, under two MLMD channels (an underspread channel for terrestrial vehicular communication, and an overspread channel for narrow-band underwater acoustic communications), Monte Carlo simulation results and analysis are provided to validate its advantages as a promising detector for OCDM.

cs.IT↗
arXiv2024

HOI4D: A 4D Egocentric Dataset for Category-Level Human-Object Interaction

We present HOI4D, a large-scale 4D egocentric dataset with rich annotations, to catalyze the research of category-level human-object interaction. HOI4D consists of 2.4M RGB-D egocentric video frames over 4000 sequences collected by 4 participants interacting with 800 different object instances from 16 categories over 610 different indoor rooms. Frame-wise annotations for panoptic segmentation, motion segmentation, 3D hand pose, category-level object pose and hand action have also been provided, together with reconstructed object meshes and scene point clouds. With HOI4D, we establish three benchmarking tasks to promote category-level HOI from 4D visual signals including semantic segmentation of 4D dynamic point cloud sequences, category-level object pose tracking, and egocentric action segmentation with diverse interaction targets. In-depth analysis shows HOI4D poses great challenges to existing methods and produces great research opportunities.

cs.CV↗
arXiv2023

Enhancing Generalizable 6D Pose Tracking of an In-Hand Object with Tactile Sensing

When manipulating an object to accomplish complex tasks, humans rely on both vision and touch to keep track of the object's 6D pose. However, most existing object pose tracking systems in robotics rely exclusively on visual signals, which hinder a robot's ability to manipulate objects effectively. To address this limitation, we introduce TEG-Track, a tactile-enhanced 6D pose tracking system that can track previously unseen objects held in hand. From consecutive tactile signals, TEG-Track optimizes object velocities from marker flows when slippage does not occur, or regresses velocities using a slippage estimation network when slippage is detected. The estimated object velocities are integrated into a geometric-kinematic optimization scheme to enhance existing visual pose trackers. To evaluate our method and to facilitate future research, we construct a real-world dataset for visual-tactile in-hand object pose tracking. Experimental results demonstrate that TEG-Track consistently enhances state-of-the-art generalizable 6D pose trackers in synthetic and real-world scenarios. Our code and dataset are available at https://github.com/leolyliu/TEG-Track.

cs.CV↗
arXiv2023

Revisiting Computer-Aided Tuberculosis Diagnosis

Tuberculosis (TB) is a major global health threat, causing millions of deaths annually. Although early diagnosis and treatment can greatly improve the chances of survival, it remains a major challenge, especially in developing countries. Recently, computer-aided tuberculosis diagnosis (CTD) using deep learning has shown promise, but progress is hindered by limited training data. To address this, we establish a large-scale dataset, namely the Tuberculosis X-ray (TBX11K) dataset, which contains 11,200 chest X-ray (CXR) images with corresponding bounding box annotations for TB areas. This dataset enables the training of sophisticated detectors for high-quality CTD. Furthermore, we propose a strong baseline, SymFormer, for simultaneous CXR image classification and TB infection area detection. SymFormer incorporates Symmetric Search Attention (SymAttention) to tackle the bilateral symmetry property of CXR images for learning discriminative features. Since CXR images may not strictly adhere to the bilateral symmetry property, we also propose Symmetric Positional Encoding (SPE) to facilitate SymAttention through feature recalibration. To promote future research on CTD, we build a benchmark by introducing evaluation metrics, evaluating baseline models reformed from existing detectors, and running an online challenge. Experiments show that SymFormer achieves state-of-the-art performance on the TBX11K dataset. The data, code, and models will be released at https://github.com/yun-liu/Tuberculosis.

cs.CV↗
arXiv2023

Towards Accurate Differential Diagnosis with Large Language Models

An accurate differential diagnosis (DDx) is a cornerstone of medical care, often reached through an iterative process of interpretation that combines clinical history, physical examination, investigations and procedures. Interactive interfaces powered by Large Language Models (LLMs) present new opportunities to both assist and automate aspects of this process. In this study, we introduce an LLM optimized for diagnostic reasoning, and evaluate its ability to generate a DDx alone or as an aid to clinicians. 20 clinicians evaluated 302 challenging, real-world medical cases sourced from the New England Journal of Medicine (NEJM) case reports. Each case report was read by two clinicians, who were randomized to one of two assistive conditions: either assistance from search engines and standard medical resources, or LLM assistance in addition to these tools. All clinicians provided a baseline, unassisted DDx prior to using the respective assistive tools. Our LLM for DDx exhibited standalone performance that exceeded that of unassisted clinicians (top-10 accuracy 59.1% vs 33.6%, [p = 0.04]). Comparing the two assisted study arms, the DDx quality score was higher for clinicians assisted by our LLM (top-10 accuracy 51.7%) compared to clinicians without its assistance (36.1%) (McNemar's Test: 45.7, p < 0.01) and clinicians with search (44.4%) (4.75, p = 0.03). Further, clinicians assisted by our LLM arrived at more comprehensive differential lists than those without its assistance. Our study suggests that our LLM for DDx has potential to improve clinicians' diagnostic reasoning and accuracy in challenging cases, meriting further real-world evaluation for its ability to empower physicians and widen patients' access to specialist-level expertise.

cs.CY↗
arXiv2023

Rethinking Global Context in Crowd Counting

This paper investigates the role of global context for crowd counting. Specifically, a pure transformer is used to extract features with global information from overlapping image patches. Inspired by classification, we add a context token to the input sequence, to facilitate information exchange with tokens corresponding to image patches throughout transformer layers. Due to the fact that transformers do not explicitly model the tried-and-true channel-wise interactions, we propose a token-attention module (TAM) to recalibrate encoded features through channel-wise attention informed by the context token. Beyond that, it is adopted to predict the total person count of the image through regression-token module (RTM). Extensive experiments on various datasets, including ShanghaiTech, UCF-QNRF, JHU-CROWD++ and NWPU, demonstrate that the proposed context extraction techniques can significantly improve the performance over the baselines.

cs.CV↗
arXiv2023

Critical dehydrogenation steps of perhydro-N-ethylcarbazole on Ru(0001) surface

Understanding of the critical atomistic steps during the dehydrogenation process of liquid organic hydrogen carriers (LOHCs) is important to the design of cost-efficient, high-performance LOHC catalysts. Based on the density functional theory (DFT) we studied the thermodynamics and kinetics of the complete dehydrogenation path of perhydro-N-ethylcarbazole (12H-NEC) on Ru(0001) surface, involving the adsorption of 12H-NEC, the discharge of H ions onto Ru surface, and the desorption of H2 and hydrogen-lean NEC. It was found that the bonding of nH-NEC is significantly strengthened for n $\le$ 4 because of the flat aromatic ring. Although the whole dehydrogenation process is endothermic, the release of H from nH-NEC, with H adsorbed onto the Ru surface, was found to be exothermic. The desorption of flat, hydrogen-lean NEC, which costs ~255 kJ/mol, was identified as the most energy demanding step. In addition, the effect of surface morphology on adsorption was studied based on an amorphous surface model. Overall, the results imply more efficient dehydrogenation could be achieved from relatively weak bonding of NEC to catalysts, either through engineering catalyst surface (such as surface defects or smaller catalyst particles) or different catalyst materials. Our calculations also revealed possible dealkylation at elevated temperatures.

cond-mat.mtrl-sci↗
arXiv2023

Natural liquid organic hydrogen carrier with low dehydrogenation energy: A first principles study

Liquid organic hydrogen carriers (LOHCs) represent a promising approach for hydrogen storage due to their favorable properties including stability and compatibility with the existing infrastructure. However, fossil-based LOHC molecules are not green or sustainable. Here we examined the possibility of using norbelladine and trisphaeridine, two typical structures of Amaryllidaceae alkaloids, as the LOHCs from the sustainable and renewable sources of natural products. Our first principles thermodynamics calculations reveal low reversibility for the reaction of norbelladine to/from perhydro-norbelladine because of the existence of stabler isomers of perhydro-norbelladine. On the other hand, trisphaeridine is found promising due to its high hydrogen storage capacity ($\sim$5.9 wt\%) and favorable energetics. Dehydrogenation of perhydro-trisphaeridine has an average standard enthalpy change of $\sim$54 KJ/mol-H$_2$, similar to that of perhydro-\textit{N}-ethylcarbazole, a typical LOHC known for its low dehydrogenation enthalpy. This work is a first exploration of Amaryllidaceae alkaloids for hydrogen storage and the results demonstrate, more generally, the potential of bio-based molecules as a new sustainable resource for future large-scale hydrogen storage.

physics.chem-ph↗
arXiv2023

Is hydrogen diffusion in amorphous metals non-Arrhenian?

Hydrogen diffusion is critical to the performance of metals for hydrogen storage as well as other important applications. As compared to its crystalline counterpart which follows the Arrhenius relation, hydrogen diffusion in amorphous metals sometimes are experimentally found to be non-Arrhenian. In this work we studied the diffusion of hydrogen in amorphous Pd-H and Zr-Cu-H alloys based on molecular dynamics simulations. Our simulations confirm Arrhenian diffusion behaviour for hydrogen in amorphous alloys, in contrast to previous theoretical studies which predict non-Arrhenian behaviour. We show that the simulated non-Arrhenian diffusion based on molecular dynamics could result from a systematic error related to too short simulation time. We also discussed the experimental non-Arrhenian behaviour of hydrogen diffusion within the framework of quantum tunneling and amorphous-amorphous phase transformations.

cond-mat.mtrl-sci↗
arXiv2023

Domain-specific optimization and diverse evaluation of self-supervised models for histopathology

Task-specific deep learning models in histopathology offer promising opportunities for improving diagnosis, clinical research, and precision medicine. However, development of such models is often limited by availability of high-quality data. Foundation models in histopathology that learn general representations across a wide range of tissue types, diagnoses, and magnifications offer the potential to reduce the data, compute, and technical expertise necessary to develop task-specific deep learning models with the required level of model performance. In this work, we describe the development and evaluation of foundation models for histopathology via self-supervised learning (SSL). We first establish a diverse set of benchmark tasks involving 17 unique tissue types and 12 unique cancer types and spanning different optimal magnifications and task types. Next, we use this benchmark to explore and evaluate histopathology-specific SSL methods followed by further evaluation on held out patch-level and weakly supervised tasks. We found that standard SSL methods thoughtfully applied to histopathology images are performant across our benchmark tasks and that domain-specific methodological improvements can further increase performance. Our findings reinforce the value of using domain-specific SSL methods in pathology, and establish a set of high quality foundation models to enable further research across diverse applications.

eess.IV↗
arXiv2023

$\mathrm{SAM^{Med}}$: A medical image annotation framework based on large vision model

Recently, large vision model, Segment Anything Model (SAM), has revolutionized the computer vision field, especially for image segmentation. SAM presented a new promptable segmentation paradigm that exhibit its remarkable zero-shot generalization ability. An extensive researches have explore the potential and limits of SAM in various downstream tasks. In this study, we presents $\mathrm{SAM^{Med}}$, an enhanced framework for medical image annotation that leverages the capabilities of SAM. $\mathrm{SAM^{Med}}$ framework consisted of two submodules, namely $\mathrm{SAM^{assist}}$ and $\mathrm{SAM^{auto}}$. The $\mathrm{SAM^{assist}}$ demonstrates the generalization ability of SAM to the downstream medical segmentation task using the prompt-learning approach. Results show a significant improvement in segmentation accuracy with only approximately 5 input points. The $\mathrm{SAM^{auto}}$ model aims to accelerate the annotation process by automatically generating input prompts. The proposed SAP-Net model achieves superior segmentation performance with only five annotated slices, achieving an average Dice coefficient of 0.80 and 0.82 for kidney and liver segmentation, respectively. Overall, $\mathrm{SAM^{Med}}$ demonstrates promising results in medical image annotation. These findings highlight the potential of leveraging large-scale vision models in medical image annotation tasks.

cs.CV↗
arXiv2023

Efficient Polyp Segmentation Via Integrity Learning

Accurate polyp delineation in colonoscopy is crucial for assisting in diagnosis, guiding interventions, and treatments. However, current deep-learning approaches fall short due to integrity deficiency, which often manifests as missing lesion parts. This paper introduces the integrity concept in polyp segmentation at both macro and micro levels, aiming to alleviate integrity deficiency. Specifically, the model should distinguish entire polyps at the macro level and identify all components within polyps at the micro level. Our Integrity Capturing Polyp Segmentation (IC-PolypSeg) network utilizes lightweight backbones and 3 key components for integrity ameliorating: 1) Pixel-wise feature redistribution (PFR) module captures global spatial correlations across channels in the final semantic-rich encoder features. 2) Cross-stage pixel-wise feature redistribution (CPFR) module dynamically fuses high-level semantics and low-level spatial features to capture contextual information. 3) Coarse-to-fine calibration module combines PFR and CPFR modules to achieve precise boundary detection. Extensive experiments on 5 public datasets demonstrate that the proposed IC-PolypSeg outperforms 8 state-of-the-art methods in terms of higher precision and significantly improved computational efficiency with lower computational consumption. IC-PolypSeg-EF0 employs 300 times fewer parameters than PraNet while achieving a real-time processing speed of 235 FPS. Importantly, IC-PolypSeg reduces the false negative ratio on five datasets, meeting clinical requirements.

eess.IV↗
arXiv2023

Masked Diffusion with Task-awareness for Procedure Planning in Instructional Videos

A key challenge with procedure planning in instructional videos lies in how to handle a large decision space consisting of a multitude of action types that belong to various tasks. To understand real-world video content, an AI agent must proficiently discern these action types (e.g., pour milk, pour water, open lid, close lid, etc.) based on brief visual observation. Moreover, it must adeptly capture the intricate semantic relation of the action types and task goals, along with the variable action sequences. Recently, notable progress has been made via the integration of diffusion models and visual representation learning to address the challenge. However, existing models employ rudimentary mechanisms to utilize task information to manage the decision space. To overcome this limitation, we introduce a simple yet effective enhancement - a masked diffusion model. The introduced mask acts akin to a task-oriented attention filter, enabling the diffusion/denoising process to concentrate on a subset of action types. Furthermore, to bolster the accuracy of task classification, we harness more potent visual representation learning techniques. In particular, we learn a joint visual-text embedding, where a text embedding is generated by prompting a pre-trained vision-language model to focus on human actions. We evaluate the method on three public datasets and achieve state-of-the-art performance on multiple metrics. Code is available at https://github.com/ffzzy840304/Masked-PDPP.

cs.CV↗
arXiv2023

ELIXR: Towards a general purpose X-ray artificial intelligence system through alignment of large language models and radiology vision encoders

In this work, we present an approach, which we call Embeddings for Language/Image-aligned X-Rays, or ELIXR, that leverages a language-aligned image encoder combined or grafted onto a fixed LLM, PaLM 2, to perform a broad range of chest X-ray tasks. We train this lightweight adapter architecture using images paired with corresponding free-text radiology reports from the MIMIC-CXR dataset. ELIXR achieved state-of-the-art performance on zero-shot chest X-ray (CXR) classification (mean AUC of 0.850 across 13 findings), data-efficient CXR classification (mean AUCs of 0.893 and 0.898 across five findings (atelectasis, cardiomegaly, consolidation, pleural effusion, and pulmonary edema) for 1% (~2,200 images) and 10% (~22,000 images) training data), and semantic search (0.76 normalized discounted cumulative gain (NDCG) across nineteen queries, including perfect retrieval on twelve of them). Compared to existing data-efficient methods including supervised contrastive learning (SupCon), ELIXR required two orders of magnitude less data to reach similar performance. ELIXR also showed promise on CXR vision-language tasks, demonstrating overall accuracies of 58.7% and 62.5% on visual question answering and report quality assurance tasks, respectively. These results suggest that ELIXR is a robust and versatile approach to CXR AI.

cs.CV↗
arXiv2023

Boosting Salient Object Detection with Transformer-based Asymmetric Bilateral U-Net

Existing salient object detection (SOD) methods mainly rely on U-shaped convolution neural networks (CNNs) with skip connections to combine the global contexts and local spatial details that are crucial for locating salient objects and refining object details, respectively. Despite great successes, the ability of CNNs in learning global contexts is limited. Recently, the vision transformer has achieved revolutionary progress in computer vision owing to its powerful modeling of global dependencies. However, directly applying the transformer to SOD is suboptimal because the transformer lacks the ability to learn local spatial representations. To this end, this paper explores the combination of transformers and CNNs to learn both global and local representations for SOD. We propose a transformer-based Asymmetric Bilateral U-Net (ABiU-Net). The asymmetric bilateral encoder has a transformer path and a lightweight CNN path, where the two paths communicate at each encoder stage to learn complementary global contexts and local spatial details, respectively. The asymmetric bilateral decoder also consists of two paths to process features from the transformer and CNN encoder paths, with communication at each decoder stage for decoding coarse salient object locations and fine-grained object details, respectively. Such communication between the two encoder/decoder paths enables AbiU-Net to learn complementary global and local representations, taking advantage of the natural merits of transformers and CNNs, respectively. Hence, ABiU-Net provides a new perspective for transformer-based SOD. Extensive experiments demonstrate that ABiU-Net performs favorably against previous state-of-the-art SOD methods. The code is available at https://github.com/yuqiuyuqiu/ABiU-Net.

cs.CV↗
arXiv2023

NightHazeFormer: Single Nighttime Haze Removal Using Prior Query Transformer

Nighttime image dehazing is a challenging task due to the presence of multiple types of adverse degrading effects including glow, haze, blurry, noise, color distortion, and so on. However, most previous studies mainly focus on daytime image dehazing or partial degradations presented in nighttime hazy scenes, which may lead to unsatisfactory restoration results. In this paper, we propose an end-to-end transformer-based framework for nighttime haze removal, called NightHazeFormer. Our proposed approach consists of two stages: supervised pre-training and semi-supervised fine-tuning. During the pre-training stage, we introduce two powerful priors into the transformer decoder to generate the non-learnable prior queries, which guide the model to extract specific degradations. For the fine-tuning, we combine the generated pseudo ground truths with input real-world nighttime hazy images as paired images and feed into the synthetic domain to fine-tune the pre-trained model. This semi-supervised fine-tuning paradigm helps improve the generalization to real domain. In addition, we also propose a large-scale synthetic dataset called UNREAL-NH, to simulate the real-world nighttime haze scenarios comprehensively. Extensive experiments on several synthetic and real-world datasets demonstrate the superiority of our NightHazeFormer over state-of-the-art nighttime haze removal methods in terms of both visually and quantitatively.

cs.CV↗
arXiv2023

Towards Generalist Biomedical AI

Medicine is inherently multimodal, with rich data modalities spanning text, imaging, genomics, and more. Generalist biomedical artificial intelligence (AI) systems that flexibly encode, integrate, and interpret this data at scale can potentially enable impactful applications ranging from scientific discovery to care delivery. To enable the development of these models, we first curate MultiMedBench, a new multimodal biomedical benchmark. MultiMedBench encompasses 14 diverse tasks such as medical question answering, mammography and dermatology image interpretation, radiology report generation and summarization, and genomic variant calling. We then introduce Med-PaLM Multimodal (Med-PaLM M), our proof of concept for a generalist biomedical AI system. Med-PaLM M is a large multimodal generative model that flexibly encodes and interprets biomedical data including clinical language, imaging, and genomics with the same set of model weights. Med-PaLM M reaches performance competitive with or exceeding the state of the art on all MultiMedBench tasks, often surpassing specialist models by a wide margin. We also report examples of zero-shot generalization to novel medical concepts and tasks, positive transfer learning across tasks, and emergent zero-shot medical reasoning. To further probe the capabilities and limitations of Med-PaLM M, we conduct a radiologist evaluation of model-generated (and human) chest X-ray reports and observe encouraging performance across model scales. In a side-by-side ranking on 246 retrospective chest X-rays, clinicians express a pairwise preference for Med-PaLM M reports over those produced by radiologists in up to 40.50% of cases, suggesting potential clinical utility. While considerable work is needed to validate these models in real-world use cases, our results represent a milestone towards the development of generalist biomedical AI systems.

cs.CL↗
arXiv2023

The interdependence between hospital choice and waiting time -- with a case study in urban China

Hospital choice models often employ random utility theory and include waiting time as a choice determinant. When applied to evaluate health system improvement interventions, these models disregard that hospital choice in turn is a determinant of waiting time. We present a novel, general model capturing the endogeneous relationship between waiting time and hospital choice, including the choice to opt out, and characterize the unique equilibrium solution of the resulting convex problem. We apply the general model in a case study on the urban Chinese health system, specifying that patient choice follows a multinomial logit (MNL) model and waiting times are determined by M/M/1 queues. The results reveal that analyses which solely rely on MNL models overestimate the effectiveness of present policy interventions and that this effectiveness is limited. We explore alternative, more effective, improvement interventions.

math.OC↗