arXiv subjects

Zhiyu Sun

Publications and source records attributed to Zhiyu Sun.

45 records · Page 3Linked to original sources

arXiv2019

Deep segmentation networks predict survival of non-small cell lung cancer

Non-small-cell lung cancer (NSCLC) represents approximately 80-85% of lung cancer diagnoses and is the leading cause of cancer-related death worldwide. Recent studies indicate that image-based radiomics features from positron emission tomography-computed tomography (PET/CT) images have predictive power on NSCLC outcomes. To this end, easily calculated functional features such as the maximum and the mean of standard uptake value (SUV) and total lesion glycolysis (TLG) are most commonly used for NSCLC prognostication, but their prognostic value remains controversial. Meanwhile, convolutional neural networks (CNN) are rapidly emerging as a new premise for cancer image analysis, with significantly enhanced predictive power compared to other hand-crafted radiomics features. Here we show that CNN trained to perform the tumor segmentation task, with no other information than physician contours, identify a rich set of survival-related image features with remarkable prognostic value. In a retrospective study on 96 NSCLC patients before stereotactic-body radiotherapy (SBRT), we found that the CNN segmentation algorithm (U-Net) trained for tumor segmentation in PET/CT images, contained features having strong correlation with 2- and 5-year overall and disease-specific survivals. The U-net algorithm has not seen any other clinical information (e.g. survival, age, smoking history) than the images and the corresponding tumor contours provided by physicians. Furthermore, through visualization of the U-Net, we also found convincing evidence that the regions of progression appear to match with the regions where the U-Net features identified patterns that predicted higher likelihood of death. We anticipate our findings will be a starting point for more sophisticated non-intrusive patient specific cancer prognosis determination.

eess.IV↗

arXiv2019

Embedded Spectral Descriptors: Learning the point-wise correspondence metric via Siamese neural networks

A robust and informative local shape descriptor plays an important role in mesh registration. In this regard, spectral descriptors that are based on the spectrum of the Laplace-Beltrami operator have been a popular subject of research for the last decade due to their advantageous properties, such as isometry invariance. Despite such, however, spectral descriptors often fail to give a correct similarity measure for non-isometric cases where the metric distortion between the models is large. Hence, they are not reliable for correspondence matching problems when the models are not isometric. In this paper, it is proposed a method to improve the similarity metric of spectral descriptors for correspondence matching problems. We embed a spectral shape descriptor into a different metric space where the Euclidean distance between the elements directly indicates the geometric dissimilarity. We design and train a Siamese neural network to find such an embedding, where the embedded descriptors are promoted to rearrange based on the geometric similarity. We demonstrate our approach can significantly enhance the performance of the conventional spectral descriptors by the simple augmentation achieved via the Siamese neural network in comparison to other state-of-the-art methods.

cs.GR↗

arXiv2019

ZerNet: Convolutional Neural Networks on Arbitrary Surfaces via Zernike Local Tangent Space Estimation

In this paper, we propose a novel formulation to extend CNNs to two-dimensional (2D) manifolds using orthogonal basis functions, called Zernike polynomials. In many areas, geometric features play a key role in understanding scientific phenomena. Thus, an ability to codify geometric features into a mathematical quantity can be critical. Recently, convolutional neural networks (CNNs) have demonstrated the promising capability of extracting and codifying features from visual information. However, the progress has been concentrated in computer vision applications where there exists an inherent grid-like structure. In contrast, many geometry processing problems are defined on curved surfaces, and the generalization of CNNs is not quite trivial. The difficulties are rooted in the lack of key ingredients such as the canonical grid-like representation, the notion of consistent orientation, and a compatible local topology across the domain. In this paper, we prove that the convolution of two functions can be represented as a simple dot product between Zernike polynomial coefficients; and the rotation of a convolution kernel is essentially a set of 2-by-2 rotation matrices applied to the coefficients. As such, the key contribution of this work resides in a concise but rigorous mathematical generalization of the CNN building blocks.

cs.CV↗

arXiv2018

Charge Measurement of Cosmic Ray Nuclei with the Plastic Scintillator Detector of DAMPE

One of the main purposes of the DArk Matter Particle Explorer (DAMPE) is to measure the cosmic ray nuclei up to several tens of TeV or beyond, whose origin and propagation remains a hot topic in astrophysics. The Plastic Scintillator Detector (PSD) on top of DAMPE is designed to measure the charges of cosmic ray nuclei from H to Fe and serves as a veto detector for discriminating gamma-rays from charged particles. We propose in this paper a charge reconstruction procedure to optimize the PSD performance in charge measurement. Essentials of our approach, including track finding, alignment of PSD, light attenuation correction, quenching and equalization correction are described detailedly in this paper after a brief description of the structure and operational principle of the PSD. Our results show that the PSD works very well and almost all the elements in cosmic rays from H to Fe are clearly identified in the charge spectrum.

astro-ph.IM↗

arXiv2018

Wall Stress Estimation of Cerebral Aneurysm based on Zernike Convolutional Neural Networks

Convolutional neural networks (ConvNets) have demonstrated an exceptional capacity to discern visual patterns from digital images and signals. Unfortunately, such powerful ConvNets do not generalize well to arbitrary-shaped manifolds, where data representation does not fit into a tensor-like grid. Hence, many fields of science and engineering, where data points possess some manifold structure, cannot enjoy the full benefits of the recent advances in ConvNets. The aneurysm wall stress estimation problem introduced in this paper is one of many such problems. The problem is well-known to be of a paramount clinical importance, but yet, traditional ConvNets cannot be applied due to the manifold structure of the data, neither does the state-of-the-art geometric ConvNets perform well. Motivated by this, we propose a new geometric ConvNet method named ZerNet, which builds upon our novel mathematical generalization of convolution and pooling operations on manifolds. Our study shows that the ZerNet outperforms the other state-of-the-art geometric ConvNets in terms of accuracy.

cs.LG↗

arXiv2017

A Deep Learning Framework for Short-term Power Load Forecasting

The scheduling and operation of power system becomes prominently complex and uncertain, especially with the penetration of distributed power. Load forecasting matters to the effective operation of power system. This paper proposes a novel deep learning framework to forecast the short-term grid load. First, the load data is processed by Box-Cox transformation, and two parameters (electricity price and temperature) are investigated. Then, to quantify the tail-dependence of power load on the two parameters, parametric Copula models are fitted and the threshold of peak load are computed. Next, a deep belief network is built to forecast the hourly load of the power grid. One year grid load data collected from an urbanized area in Texas, United States is utilized in the case studies. Short-term load forecasting are examined in four seasons independently. Day-ahead and week-ahead load forecasting experiments are conducted in each season using the proposed framework. The proposed framework is compared with classical neural networks, support vector regression machine, extreme learning machine, and classical deep belief networks. The load forecasting performances are assessed by mean absolute percentage error, root mean square error, and hit rate. Computational results confirm the effectiveness of the proposed data-driven deep learning framework. The prediction accuracies of both day-ahead forecasting and week-ahead forecasting demonstrate that the proposed framework outperforms the tested algorithms.

cs.CE↗

arXiv2017

The Plastic Scintillator Detector at DAMPE

he DArk Matter Particle Explorer (DAMPE) is a general purposed satellite-borne high energy $γ-$ray and cosmic ray detector, and among the scientific objectives of DAMPE are the searches for the origin of cosmic rays and an understanding of Dark Matter particles. As one of the four detectors in DAMPE, the Plastic Scintillator Detector (PSD) plays an important role in the particle charge measurement and the photons/electrons separation. The PSD has 82 modules, each consists of a long organic plastic scintillator bar and two PMTs at both ends for readout, in two layers and covers an overall active area larger than 82 cm $\times$ 82 cm. It can identify the charge states for relativistic ions from H to Fe, and the detector efficiency for Z=1 particles can reach 0.9999. The PSD has been successfully launched with DAMPE on Dec. 17, 2015. In this paper, the design, the assembly, the qualification tests of the PSD and some of the performance measured on the ground have been described in detail.

astro-ph.IM↗

arXiv2016

Design of a large dynamic range readout unit for the PSD detector of DAMPE

A large dynamic range is required by the Plastic Scintillator Detector (PSD) of DArk Matter Paricle Explorer (DAMPE), and a double-dynode readout has been developed. To verify this design, a prototype detector module has been constructed and tested with cosmic rays and heavy ion beams. The results match with the estimation and the readout unit could easily cover the required dynamic range.

physics.ins-det↗

arXiv2015

A versatile PMT test bench and its application in the DAMPE-PSD

A versatile test bench system, dedicated for massive PMT characterization, is developed at the Institute of Modern Physics, Chinese Academy of Sciences. It can perform many test contents with large capacity and high level of automation, and the migration from one testing configuration to another is lightweight and time-saving. This system has been used in the construction of the Plastic Scintillator Detector of DArk Matter Particle Explorer already, and a total of 570 Hamamatsu R4443 tubes have been tested successfully.

physics.ins-det↗