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arXiv · 0810.4771

Temperature dependence of normal mode reconstructions of protein dynamics

Francesco Piazza·Paolo De Los Rios·Fabio Cecconi
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Abstract

Normal mode analysis is a widely used technique for reconstructing conformational changes of proteins from the knowledge of native structures. In this Letter, we investigate to what extent normal modes capture the salient features of the dynamics over a range of temperatures from close to T = 0 to above unfolding. We show that on the one hand, the use of normal modes at physiological temperatures is justified provided proteins are cooperative. On the other hand, it is imperative to consider several modes in order to eliminate the unpredictable temperature dependence of single- mode contributions to the protein fluctuations.

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Francesco Piazza, Paolo De Los Rios, Fabio Cecconi. 2008-10-27. Temperature dependence of normal mode reconstructions of protein dynamics. https://doi.org/10.1103/physrevlett.102.218104

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