SearcharxivSearch

arXiv · 1511.03306

An Asymptotic Analysis of a 2-D Model of Dynamically Active Compartments Coupled by Bulk Diffusion

Abstract

A class of coupled cell-bulk ODE-PDE models is formulated and analyzed in a two-dimensional domain, which is relevant to studying quorum sensing behavior on thin substrates. In this model, spatially segregated dynamically active signaling cells of a common small radius $ε\ll 1$ are coupled through a passive bulk diffusion field. The method of matched asymptotic expansions is used to construct steady-state solutions and to formulate a spectral problem that characterizes the linear stability properties of these solutions, with the aim of predicting whether temporal oscillations can be triggered by the cell-bulk coupling. Phase diagrams in parameter space where such collective oscillations can occur are illustrated for two specific choices of the intracellular kinetics. In the limit of very large bulk diffusion, it is shown that the ODE-PDE system can be approximated by a finite-dimensional dynamical system, which is studied both analytically and numerically. For one illustrative example of the theory it is shown that when the number of cells exceeds some critical number, the bulk diffusion field can trigger oscillations that would otherwise not occur without the coupling. Moreover, for two specific models for the intracellular dynamics, we show that there are rather wide regions in parameter space where these triggered oscillations are synchronous in nature. Unless the bulk diffusivity is asymptotically large, it is shown that a clustered spatial configuration of cells inside the domain leads to larger regions in parameter space where synchronous collective oscillations between the small cells can occur. Finally, the linear stability analysis for these cell-bulk models is shown to be qualitatively rather similar to that of localized spot patterns for activator-inhibitor reaction-diffusion systems in the limit of long-range inhibition and short-range activation.

Explore related subjects

Keep this discovery

BibTeXRIS

J. Gou, M. J. Ward. 2015-11-10. An Asymptotic Analysis of a 2-D Model of Dynamically Active Compartments Coupled by Bulk Diffusion. https://doi.org/10.1007/s00332-016-9296-7

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Self-similar vector solitons for the coupled higher-order nonlinear Schrodinger equations in inhomogeneous optical fibers

We prove the existence of two kinds of self-similar vector solitons in an inhomogeneous optical fiber medium, where light propagation is governed by a pair of coupled higher-order nonlinear Schrodinger equations with varying second- and third-order dispersions, self- and cross-phase modulation non linearities, self-steepening, and linear gain/loss effects. The newly found self-similar waves comprise bright-W-shaped and kink-antikink waveforms with nonvanishing amplitudes. As a practical exam ple, we discuss the propagation dynamics of these soliton structures in a periodically distributed fiber system as well as an exponential dispersion-decreasing fiber. The results demonstrate that the parameter functions of gain/loss and third-order dispersion serve as a key factor in determining the nonlinear dynamics of self-similar vector solitons. In particular, we find that precise control over the shape and dynamic evolution of self-similar pulses can be achieved through a proper choice of the distributed third-order dispersion parameter, while the gain/loss coefficient controls their intensity.

nlin.PS

Fast Synergetic Simulation to Study Slow Evolution of Soliton Patterns in Optical Resonators

Complex patterns in physical and biological systems often emerge through slow collective dynamics governed by a small number of key variables. In nonlinear optical resonators, dissipative Kerr solitons provide an important example, where interactions between well-separated solitons can evolve over timescales far longer than the characteristic loss and gain timescales. Direct numerical simulation of these dynamics is challenging because stiffness forces conventional methods to resolve many rapidly damped degrees-of-freedom with very small time steps. We present a numerical scheme, the synergetic method, that eliminates these rapidly damped degrees-of-freedom and retains the slowly evolving modes, enabling time steps many orders of magnitude larger than those used in conventional approaches. Applied to soliton molecules in driven Kerr cavities, the method achieves speedups of $10^3$ to $10^5$ while capturing dynamics on laboratory timescales. We use it to model the full interaction dynamics of a three-soliton molecule and the evolution of an eight-soliton molecule. The approach provides an efficient framework for studying slow pattern formation in nonlinear systems with widely separated timescales.

nlin.PS

Breathers in solitonic room-temperature superlattice-induced superfluorescence in quasi-2D perovskites

Recently, a soliton mechanism for room-temperature superfluorescence in thin perovskite films has been proposed, with a fundamental soliton predicted to remain stable under LO phonon--exciton interactions. At the same time, superlattice architectures offer a route to enhancing superfluorescence in perovskites. Motivated by recent observations of room-temperature superfluorescence in periodic superlattices of quasi-2D metal-halide perovskites, we extend the 2D nonlocal nonlinear Schr\"odinger equation describing Wannier exciton--LO phonon interactions to superlattice structures, obtaining a 3D nonlocal nonlinear Schr\"odinger equation. We show that interlayer tunnelling gives rise to breather dynamics corresponding to a stable fundamental soliton in mixed coordinate--momentum space, with the coordinate parallel to the layers and the momentum perpendicular to them. The breather dynamics originate from miniband formation, which induces a momentum-dependent phase modulation of the soliton. In the absence of interlayer tunnelling, the breather dynamics disappear and the soliton becomes stationary. These results establish a direct connection between interlayer tunnelling, miniband formation and soliton dynamics, suggesting that breather behavior can provide a signature of interlayer tunnelling in quasi-2D perovskite superlattices.

nlin.PS