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arXiv · 2205.03373

DADApy: Distance-based Analysis of DAta-manifolds in Python

Aldo Glielmo·Iuri Macocco·Diego Doimo·Matteo Carli·Claudio Zeni·Romina Wild·Maria d'Errico·Alex Rodriguez·Alessandro Laio
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Abstract

DADApy is a python software package for analysing and characterising high-dimensional data manifolds. It provides methods for estimating the intrinsic dimension and the probability density, for performing density-based clustering and for comparing different distance metrics. We review the main functionalities of the package and exemplify its usage in toy cases and in a real-world application. DADApy is freely available under the open-source Apache 2.0 license.

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Aldo Glielmo, Iuri Macocco, Diego Doimo, Matteo Carli, Claudio Zeni, Romina Wild, Maria d'Errico, Alex Rodriguez, Alessandro Laio. 2022-05-04. DADApy: Distance-based Analysis of DAta-manifolds in Python. https://doi.org/10.1016/j.patter.2022.100589

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