Language Models are Surprisingly Fragile to Drug Names in Biomedical Benchmarks

Jack Gallifant; Shan Chen; Pedro Moreira; Nikolaj Munch; Mingye Gao; Jackson Pond; Leo Anthony Celi; Hugo Aerts; Thomas Hartvigsen; Danielle Bitterman

arXiv · 2406.12066

Language Models are Surprisingly Fragile to Drug Names in Biomedical Benchmarks

Jack Gallifant·Shan Chen·Pedro Moreira·Nikolaj Munch·Mingye Gao·Jackson Pond·Leo Anthony Celi·Hugo Aerts·Thomas Hartvigsen·Danielle Bitterman

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Abstract

Medical knowledge is context-dependent and requires consistent reasoning across various natural language expressions of semantically equivalent phrases. This is particularly crucial for drug names, where patients often use brand names like Advil or Tylenol instead of their generic equivalents. To study this, we create a new robustness dataset, RABBITS, to evaluate performance differences on medical benchmarks after swapping brand and generic drug names using physician expert annotations. We assess both open-source and API-based LLMs on MedQA and MedMCQA, revealing a consistent performance drop ranging from 1-10\%. Furthermore, we identify a potential source of this fragility as the contamination of test data in widely used pre-training datasets. All code is accessible at https://github.com/BittermanLab/RABBITS, and a HuggingFace leaderboard is available at https://huggingface.co/spaces/AIM-Harvard/rabbits-leaderboard.

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Jack Gallifant, Shan Chen, Pedro Moreira, Nikolaj Munch, Mingye Gao, Jackson Pond, Leo Anthony Celi, Hugo Aerts, Thomas Hartvigsen, Danielle Bitterman. 2024-06-17. Language Models are Surprisingly Fragile to Drug Names in Biomedical Benchmarks. https://arxiv.org/abs/2406.12066

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