arXiv subjects

Filippo Radicchi

Publications and source records attributed to Filippo Radicchi.

At least 37 records · Page 2Linked to original sources

arXiv2024

Network community detection via neural embeddings

Recent advances in machine learning research have produced powerful neural graph embedding methods, which learn useful, low-dimensional vector representations of network data. These neural methods for graph embedding excel in graph machine learning tasks and are now widely adopted. However, how and why these methods work -- particularly how network structure gets encoded in the embedding -- remain largely unexplained. Here, we show that node2vec -- shallow, linear neural network -- encodes communities into separable clusters better than random partitioning down to the information-theoretic detectability limit for the stochastic block models. We show that this is due to the equivalence between the embedding learned by node2vec and the spectral embedding via the eigenvectors of the symmetric normalized Laplacian matrix. Numerical simulations demonstrate that node2vec is capable of learning communities on sparse graphs generated by the stochastic blockmodel, as well as on sparse degree-heterogeneous networks. Our results highlight the features of graph neural networks that enable them to separate communities in embedding space.

physics.soc-ph↗

arXiv2024

Epidemic spreading in group-structured populations

Individuals involved in common group activities/settings -- e.g., college students that are enrolled in the same class and/or live in the same dorm -- are exposed to recurrent contacts of physical proximity. These contacts are known to mediate the spread of an infectious disease, however, it is not obvious how the properties of the spreading process are determined by the structure of and the interrelation among the group settings that are at the root of those recurrent interactions. Here, we show that reshaping the organization of groups within a population can be used as an effective strategy to decrease the severity of an epidemic. Specifically, we show that when group structures are sufficiently correlated -- e.g., the likelihood for two students living in the same dorm to attend the same class is sufficiently high -- outbreaks are longer but milder than for uncorrelated group structures. Also, we show that the effectiveness of interventions for disease containment increases as the correlation among group structures increases. We demonstrate the practical relevance of our findings by taking advantage of data about housing and attendance of students at the Indiana University campus in Bloomington. By appropriately optimizing the assignment of students to dorms based on their enrollment, we are able to observe a two- to five-fold reduction in the severity of simulated epidemic processes.

physics.soc-ph↗

arXiv2024

Parallel Algorithms for Median Consensus Clustering in Complex Networks

We develop an algorithm that finds the consensus of many different clustering solutions of a graph. We formulate the problem as a median set partitioning problem and propose a greedy optimization technique. Unlike other approaches that find median set partitions, our algorithm takes graph structure into account and finds a comparable quality solution much faster than the other approaches. For graphs with known communities, our consensus partition captures the actual community structure more accurately than alternative approaches. To make it applicable to large graphs, we remove sequential dependencies from our algorithm and design a parallel algorithm. Our parallel algorithm achieves 35x speedup when utilizing 64 processing cores for large real-world graphs from single-cell experiments.

cs.IR↗

arXiv2024

Shortest-path percolation on random networks

We propose a bond-percolation model intended to describe the consumption, and eventual exhaustion, of resources in transport networks. Edges forming minimum-length paths connecting demanded origin-destination nodes are removed if below a certain budget. As pairs of nodes are demanded and edges are removed, the macroscopic connected component of the graph disappears, i.e., the graph undergoes a percolation transition. Here, we study such a shortest-path-percolation transition in homogeneous random graphs where pairs of demanded origin-destination nodes are randomly generated, and fully characterize it by means of finite-size scaling analysis. If budget is finite, the transition is identical to the one of ordinary percolation, where a single giant cluster shrinks as edges are removed from the graph; for infinite budget, the transition becomes more abrupt than the one of ordinary percolation, being characterized by the sudden fragmentation of the giant connected component into a multitude of clusters of similar size.

physics.soc-ph↗

arXiv2024

Reconstruction of multiplex networks via graph embeddings

Multiplex networks are collections of networks with identical nodes but distinct layers of edges. They are genuine representations for a large variety of real systems whose elements interact in multiple fashions or flavors. However, multiplex networks are not always simple to observe in the real world; often, only partial information on the layer structure of the networks is available, whereas the remaining information is in the form of aggregated, single-layer networks. Recent works have proposed solutions to the problem of reconstructing the hidden multiplexity of single-layer networks using tools proper of network science. Here, we develop a machine learning framework that takes advantage of graph embeddings, i.e., representations of networks in geometric space. We validate the framework in systematic experiments aimed at the reconstruction of synthetic and real-world multiplex networks, providing evidence that our proposed framework not only accomplishes its intended task, but often outperforms existing reconstruction techniques.

physics.soc-ph↗

arXiv2023

Symmetry breaking in optimal transport networks

Despite its importance for practical applications, not much is known about the optimal shape of a network that connects in an efficient way a set of points. This problem can be formulated in terms of a multiplex network with a fast layer embedded in a slow one. To connect a pair of points, one can then use either the fast or slow layer, or both, with a switching cost when going from one layer to the other. We consider here distributions of points in spaces of arbitrary dimension d and search for the fast-layer network of given size that minimizes the average time to reach a central node. We discuss the d = 1 case analytically and the d > 1 case numerically, and show the existence of transitions when we vary the network size, the switching cost and/or the relative speed of the two layers. Surprisingly, there is a transition characterized by a symmetry breaking indicating that it is sometimes better to avoid serving a whole area in order to save on switching costs, at the expense of using more the slow layer. Our findings underscore the importance of considering switching costs while studying optimal network structures, as small variations of the cost can lead to strikingly dissimilar results. Finally, we discuss real-world subways and their efficiency for the cities of Atlanta, Boston, and Toronto. We find that real subways are farther away from the optimal shapes as traffic congestion increases.

physics.soc-ph↗

arXiv2023

Dynamical Methods for Target Control of Biological Networks

Estimating the influence that individual nodes have on one another in a Boolean network is essential to predict and control the system's dynamical behavior, for example, detecting key therapeutic targets to control pathways in models of biological signaling and regulation. Exact estimation is generally not possible due to the fact that the number of configurations that must be considered grows exponentially with the system size. However, approximate, scalable methods exist in the literature. These methods can be divided in two main classes: (i) graph-theoretic methods that rely on representations of Boolean dynamics into static graphs, (ii) and mean-field approaches that describe average trajectories of the system but neglect dynamical correlations. Here, we compare systematically the performance of these state-of-the-art methods on a large collection of real-world gene regulatory networks. We find comparable performance across methods. All methods underestimate the ground truth, with mean-field approaches having a better recall but a worse precision than graph-theoretic methods. Computationally speaking, graph-theoretic methods are faster than mean-field ones in sparse networks, but are slower in dense networks. The preference of which method to use, therefore, depends on a network's connectivity and the relative importance of recall vs. precision for the specific application at hand.

physics.soc-ph↗

arXiv2023

Heterogeneous message passing for heterogeneous networks

Message passing (MP) is a computational technique used to find approximate solutions to a variety of problems defined on networks. MP approximations are generally accurate in locally tree-like networks but require corrections to maintain their accuracy level in networks rich with short cycles. However, MP may already be computationally challenging on very large networks and additional costs incurred by correcting for cycles could be prohibitive. We show how the issue can be addressed. By allowing each node in the network to have its own level of approximation, one can focus on improving the accuracy of MP approaches in a targeted manner. We perform a systematic analysis of 109 real-world networks and show that our node-based MP approximation is able to increase both the accuracy and speed of traditional MP approaches. We find that, compared to conventional MP, a heterogeneous approach based on a simple heuristic is more accurate in 81% of tested networks, faster in 64% of cases, and both more accurate and faster in 49% of cases.

physics.soc-ph↗

arXiv2023

Consistency pays off in science

The exponentially growing number of scientific papers stimulates a discussion on the interplay between quantity and quality in science. In particular, one may wonder which publication strategy may offer more chances of success: publishing lots of papers, producing a few hit papers, or something in between. Here we tackle this question by studying the scientific portfolios of Nobel Prize laureates. A comparative analysis of different citation-based indicators of individual impact suggests that the best path to success may rely on consistently producing high-quality work. Such a pattern is especially rewarded by a new metric, the $E$-index, which identifies excellence better than state-of-the-art measures.

physics.soc-ph↗

arXiv2023

The dynamic nature of percolation on networks with triadic interactions

Percolation establishes the connectivity of complex networks and is one of the most fundamental critical phenomena for the study of complex systems. On simple networks, percolation displays a second-order phase transition; on multiplex networks, the percolation transition can become discontinuous. However, little is known about percolation in networks with higher-order interactions. Here, we show that percolation can be turned into a fully-fledged dynamical process when higher-order interactions are taken into account. By introducing signed triadic interactions, in which a node can regulate the interactions between two other nodes, we define triadic percolation. We uncover that in this paradigmatic model the connectivity of the network changes in time and that the order parameter undergoes a period-doubling and a route to chaos. We provide a general theory for triadic percolation which accurately predicts the full phase diagram on random graphs as confirmed by extensive numerical simulations. We find that triadic percolation on real network topologies reveals a similar phenomenology. These results radically change our understanding of percolation and may be used to study complex systems in which the functional connectivity is changing in time dynamically and in a non-trivial way, such as in neural and climate networks.

nlin.AO↗

arXiv2023

Multiplex reconstruction with partial information

A multiplex is a collection of network layers, each representing a specific type of edges. This appears to be a genuine representation for many real-world systems. However, due to a variety of potential factors, such as limited budget and equipment, or physical impossibility, multiplex data can be difficult to observe directly. Often, only partial information on the layer structure of the system is available, whereas the remaining information is in the form of a single-layer network. In this work, we face the problem of reconstructing the hidden multiplex structure of an aggregated network from partial information. We propose an algorithm that leverages the layer-wise community structure that can be learned from partial observations to reconstruct the ground-truth topology of the unobserved part of the multiplex. The algorithm is characterized by a computational time that grows linearly with the network size. We perform a systematic study of reconstruction problems for both synthetic and real-world multiplex networks. We show that the ability of the proposed method to solve the reconstruction problem is affected by the heterogeneity of the individual layers and the similarity among the layers. On real-world networks, we observe that the accuracy of the reconstruction saturates quickly as the amount of available information increases. In genetic interaction and scientific collaboration multiplexes for example, we find that 10% of ground-truth information yields 70% accuracy, while 30% information allows for more than 90% accuracy.

physics.soc-ph↗

arXiv2023

Critical avalanches of Susceptible-Infected-Susceptible dynamics in finite networks

We investigate the avalanche temporal statistics of the Susceptible-Infected-Susceptible (SIS) model when the dynamics is critical and takes place on finite random networks. By considering numerical simulations on annealed topologies we show that the survival probability always exhibits three distinct dynamical regimes. Size-dependent crossover timescales separating them scale differently for homogeneous and for heterogeneous networks. The phenomenology can be qualitatively understood based on known features of the SIS dynamics on networks. A fully quantitative approach based on Langevin theory is shown to perfectly reproduce the results for homogeneous networks, while failing in the heterogeneous case. The analysis is extended to quenched random networks, which behave in agreement with the annealed case for strongly homogeneous and strongly heterogeneous networks.

cond-mat.stat-mech↗

arXiv2022

Influence Maximization: Divide and Conquer

The problem of influence maximization, i.e., finding the set of nodes having maximal influence on a network, is of great importance for several applications. In the past two decades, many heuristic metrics to spot influencers have been proposed. Here, we introduce a framework to boost the performance of any such metric. The framework consists in dividing the network into sectors of influence, and then selecting the most influential nodes within these sectors. We explore three different methodologies to find sectors in a network: graph partitioning, graph hyperbolic embedding, and community structure. The framework is validated with a systematic analysis of real and synthetic networks. We show that the gain in performance generated by dividing a network into sectors before selecting the influential spreaders increases as the modularity and heterogeneity of the network increase. Also, we show that the division of the network into sectors can be efficiently performed in a time that scales linearly with the network size, thus making the framework applicable to large-scale influence maximization problems.

physics.soc-ph↗

arXiv2022

Effective submodularity of influence maximization on temporal networks

We study influence maximization on temporal networks. This is a special setting where the influence function is not submodular, and there is no optimality guarantee for solutions achieved via greedy optimization. We perform an exhaustive analysis on both real and synthetic networks. We show that the influence function of randomly sampled sets of seeds often violates the necessary conditions for submodularity. However, when sets of seeds are selected according to the greedy optimization strategy, the influence function behaves effectively as a submodular function. Specifically, violations of the necessary conditions for submodularity are never observed in real networks, and only rarely in synthetic ones. The direct comparison with exact solutions obtained via brute-force search indicate that the greedy strategy provides approximate solutions that are well within the optimality gap guaranteed for strictly submodular functions. Greedy optimization appears therefore an effective strategy for the maximization of influence on temporal networks.

physics.soc-ph↗

arXiv2022

Embedding-aided network dismantling

Optimal percolation concerns the identification of the minimum-cost strategy for the destruction of any extensive connected components in a network. Solutions of such a dismantling problem are important for the design of optimal strategies of disease containment based either on immunization or social distancing. Depending on the specific variant of the problem considered, network dismantling is performed via the removal of nodes or edges, and different cost functions are associated to the removal of these microscopic elements. In this paper, we show that network representations in geometric space can be used to solve several variants of the network dismantling problem in a coherent fashion. Once a network is embedded, dismantling is implemented using intuitive geometric strategies. We demonstrate that the approach well suits both Euclidean and hyperbolic network embeddings. Our systematic analysis on synthetic and real networks demonstrates that the performance of embedding-aided techniques is comparable to, if not better than, the one of the best dismantling algorithms currently available on the market.

physics.soc-ph↗

arXiv2021

Universality, criticality and complexity of information propagation in social media

Information avalanches in social media are typically studied in a similar fashion as avalanches of neuronal activity in the brain. Whereas a large body of literature reveals substantial agreement about the existence of a unique process characterizing neuronal activity across organisms, the dynamics of information in online social media is far less understood. Statistical laws of information avalanches are found in previous studies to be not robust across systems, and radically different processes are used to represent plausible driving mechanisms for information propagation. Here, we analyze almost 1 billion time-stamped events collected from a multitude of online platforms -- including Telegram, Twitter and Weibo -- over observation windows longer than 10 years to show that the propagation of information in social media is a universal and critical process. Universality arises from the observation of identical macroscopic patterns across platforms, irrespective of the details of the specific system at hand. Critical behavior is deduced from the power-law distributions, and corresponding hyperscaling relations, characterizing size and duration of avalanches of information. Neuronal activity may be modeled as a simple contagion process, where only a single exposure to activity may be sufficient for its diffusion. On the contrary, statistical testing on our data indicates that a mixture of simple and complex contagion, where involvement of an individual requires exposure from multiple acquaintances, characterizes the propagation of information in social media. We show that the complexity of the process is correlated with the semantic content of the information that is propagated. Conversational topics about music, movies and TV shows tend to propagate as simple contagion processes, whereas controversial discussions on political/societal themes obey the rules of complex contagion.

physics.soc-ph↗

arXiv2021

Detecting climate teleconnections with Granger causality

Climate system teleconnections are crucial for improving climate predictability, but difficult to quantify. Standard approaches to identify teleconnections are often based on correlations between time series. Here we present a novel method leveraging Granger causality, which can infer/detect relationships between any two fields. We compare teleconnections identified by correlation and Granger causality at different timescales. We find that both Granger causality and correlation consistently recover known seasonal precipitation responses to the sea surface temperature pattern associated with the El Niño Southern Oscillation. Such findings are robust across multiple time resolutions. In addition, we identify candidates for unexplored teleconnection responses.

physics.ao-ph↗

arXiv2021

Principled approach to the selection of the embedding dimension of networks

Network embedding is a general-purpose machine learning technique that encodes network structure in vector spaces with tunable dimension. Choosing an appropriate embedding dimension -- small enough to be efficient and large enough to be effective -- is challenging but necessary to generate embeddings applicable to a multitude of tasks. Existing strategies for the selection of the embedding dimension rely on performance maximization in downstream tasks. Here, we propose a principled method such that all structural information of a network is parsimoniously encoded. The method is validated on various embedding algorithms and a large corpus of real-world networks. The embedding dimension selected by our method in real-world networks suggest that efficient encoding in low-dimensional spaces is usually possible.

physics.soc-ph↗