SearcharxivSearch

arXiv subjects

Irene Pertici

Publications and source records attributed to Irene Pertici.

3 recordsLinked to original sources

Reverse engineering of mechano-kinetic parameters from stochastic force profiles in heterogeneous ensembles of molecular motors and tracks

Heterogeneity in contractile systems of molecular motors interacting with their tracks plays a key role in numerous cellular physiological and pathological processes. However, its effects cannot be captured by theoretical models assuming identical mechano-kinetic properties for all motors. We developed a stochastic framework to describe heterogeneous ensembles of myosin motors comprising two populations with distinct mechano-kinetic properties. Assuming that motors interact with the actin filament (their track) as independent force generators, we derived the probability distribution of the isometric force and characterised the statistics of finite-size force fluctuations. The proposed framework includes an estimation procedure that simultaneously infers the mechano-kinetic parameters and the size of the motor ensemble, eliminating the need to prescribe it a priori. Validation against synthetic and experimental data shows the model accurately captures force fluctuations and provides realistic estimates of the ensemble size. Furthermore, the framework enables a quantitative assessment of ensemble heterogeneity and the inference of an unknown motor species properties. This approach provides a quantitative tool for characterising heterogeneous actin-myosin systems, such as those arising from the co-presence of different protein isoforms in cardiac and skeletal muscle, or from the partial replacement of native proteins with mutation-derived or engineered variants.

cond-mat.stat-mech

Resolving the kinetics of an ensemble of muscle myosin motors via a temperature-dependent fitting procedure

A data fitting procedure is devised and thoroughly tested to provide self-consistent estimates of the relevant mechanokinetic parameters involved in a plausible scheme underpinning the output of an ensemble of myosin II molecular motors mimicking the muscle contraction. The method builds on a stochastic model accounting for the force exerted by the motor ensemble operated both in the low and high force-generating regimes corresponding to different temperature ranges. The proposed interpretative framework is successfully challenged against simulated data, meant to mimic the experimental output of a unidimensional synthetic nanomachine powered by pure muscle myosin isoforms.

cond-mat.stat-mech

Force and kinetics of fast and slow muscle myosin determined with a synthetic sarcomere-like nanomachine

Myosin II is the muscle molecular motor that works in two bipolar arrays in each thick filament of the striated (skeletal and cardiac) muscle, converting the chemical energy into steady force and shortening by cyclic ATP--driven interactions with the nearby actin filaments. Different isoforms of the myosin motor in the skeletal muscles account for the different functional requirements of the slow muscles (primarily responsible for the posture) and fast muscles (responsible for voluntary movements). To clarify the molecular basis of the differences, here the isoform--dependent mechanokinetic parameters underpinning the force of slow and fast muscles are defined with a unidimensional synthetic nanomachine powered by pure myosin isoforms from either slow or fast rabbit skeletal muscle. Data fitting with a stochastic model provides a self--consistent estimate of all the mechanokinetic properties of the motor ensemble including the motor force, the fraction of actin--attached motors and the rate of transition through the attachment--detachment cycle. The achievements in this paper set the stage for any future study on the emergent mechanokinetic properties of an ensemble of myosin molecules either engineered or purified from mutant animal models or human biopsies.

cond-mat.stat-mech