arXiv subjects

Rahul Marathe

Publications and source records attributed to Rahul Marathe.

At least 37 records · Page 2Linked to original sources

arXiv2021

Heat rectification by two qubits coupled with Dzyaloshinskii-Moriya interaction

We investigate heat rectification in a two-qubit system coupled via the Dzyaloshinskii-Moriya (DM) interaction. We derive analytical expressions for heat currents and thermal rectification and provide possible physical mechanisms behind the observed results. We show that the anisotropy of DM interaction in itself is insufficient for heat rectification, and some other form of asymmetry is needed. We employ off-resonant qubits as the source of this asymmetry. We find the regime of parameters for higher rectification factors by examining the analytical expressions of rectification obtained from a global master equation solution. In addition, it is shown that the direction and quality of rectification can be controlled via various system parameters. Furthermore, we compare the influence of different orientations of the DM field anisotropy on the performance of heat rectification. Finally, we investigate the possible interplay between quantum correlations and the performance of the quantum thermal rectifier. We find that asymmetry in the coherences is a fundamental resource for the performance of the quantum thermal rectifier.

cond-mat.stat-mech↗

arXiv2021

Stochastic thermodynamics of inertial-like Stuart-Landau dimer

Stuart-Landau limit-cycle oscillators are a paradigm in the study of coherent and incoherent limit cycles. In this work, we generalize the standard Stuart-Landau dimer model to include effects due to an inertia-like term and noise and study its dynamics and stochastic thermodynamics. In the absence of noise (zero-temperature limit), the dynamics show the emergence of a new bistable phase where coherent and incoherent limit cycles coexist. At finite temperatures, we develop a stochastic thermodynamic framework based on the dynamics of a charged particle in a magnetic field to identify physically meaningful heat and work. The stochastic system no longer exhibits the bistable phase but the thermodynamic observables, such as work, exhibit bistability in the temporally metastable regime. We demonstrate that the inertial-like Stuart-Landau dimer operates like a machine, reliably outputting the most work when the oscillators coherently synchronize and unreliable with minimum work output when the oscillators are incoherent. Overall, our results show the importance of coherent synchronization within the working substance in the operation of a thermal machine.

cond-mat.stat-mech↗

arXiv2020

Underdamped Active Brownian Heat Engine

Active Brownian engines rectify energy from reservoirs composed of self-propelling non-equilibrium molecules into work. We consider a class of such engines based on an underdamped Brownian particle trapped in a power-law potential. The energy they transform has thermodynamic properties of heat only if the non-equilibrium reservoir can be assigned a suitable effective temperature consistent with the second law and thus yielding an upper bound on the engine efficiency. The effective temperature exists if the total force exerted on the particle by the bath is not correlated with the particle position. In general, this occurs if the noise autocorrelation function and the friction kernel are proportional as in the fluctuation-dissipation theorem. But even if the proportionality is broken, the effective temperature can be defined in restricted, fine-tuned, parameter regimes, as we demonstrate on a specific example with harmonic potential.

cond-mat.stat-mech↗

arXiv2020

Rectification of Twitching bacteria through narrow channels: A numerical simulations study

Bacteria living on surfaces use different types of motility mechanisms to move on the surface in search of food or to form micro-colonies. Twitching is one such form of motility employed by bacteria such as N. gonorrhoeae, in which the polymeric extensions known as type IV pili mediate its movement. Pili extending from cell body adheres to the surface and pulls the bacteria by retraction. The bacterial movement is decided by the two-dimensional tug-of-war between the pili attached to the surface. Natural surfaces in which these micro-crawlers dwell are generally spatially inhomogeneous and have varying surface properties. Their motility is known to be affected by the topography of the surfaces. Therefore, it is possible to control bacterial movement by designing structured surfaces which can be potentially utilized for controlling biofilm architecture. In this paper, we numerically investigate the twitching motility in a two-dimensional corrugated channel. The bacterial movement is simulated by two different models: (a) a detailed tug-of-war model which extensively describe the twitching motility of bacteria assisted by pili and (b) a coarse-grained run-and-tumble model which depicts the motion of wide-ranging self-propelled particles. The simulation of bacterial motion through asymmetric corrugated channels using the above models show rectification. The bacterial transport depends on the geometric parameters of the channel and inherent system parameters such as persistence length and self-propelled velocity. In particular, the variation of the particle current with the geometric parameters of the micro-channels show that one can optimize the particle current for specific values of these parameters.

physics.bio-ph↗

arXiv2019

Convergence of thermodynamic quantities and work fluctuation theorems in presence of random protocols

Recently many results namely the Fluctuation theorems (FT), have been discovered for systems arbitrarily away from equilibrium. Many of these relations have been experimentally tested. The system under consideration is usually driven out of equilibrium by an external time-dependent parameter which follows a particular {\it protocol}. One needs to perform several iterations of the same experiment in order to find statistically relevant results. Since the systems are microscopic, fluctuations dominate. Studying the convergence of relevant thermodynamics quantities with number of realizations is also important as it gives a rough estimate of number of iterations one needs to perform. In each iteration the protocol follows a predetermined {\it identical/fixed} form. However, the protocol itself may be prone to fluctuations. In this work we are interested in looking at a simple non-equilibrium system namely a Brownian particle trapped in a harmonic potential. The center of the trap is then dragged according to a protocol. We however lift the condition of fixed protocol. In our case the protocol in each realization is different. We consider one of the parameters of the protocol as a random variable, chosen from some known distribution. We study the systems analytically as well as numerically. We specifically study the convergence of the average work and free energy difference with number of realizations. Interestingly, in several cases, randomness in the protocol does not seem to affect the convergence when compared to fixed protocol results. We study symmetry functions. A Brownian particle in a double well potential is also studied numerically. We believe that our results can be experimentally verified.

cond-mat.stat-mech↗

arXiv2019

Stochastic Work Extraction in a colloidal heat engine in presence of colored noise

From synthetic active devices such as self-propelling Janus colloids to micro-organisms like bacteria, micro-algae, living cells in tissues, active fluctuations are ubiquitous. Thermodynamics of small systems involving thermal as well as active fluctuations are of immense importance. They can be employed to extract thermodynamic work. Here we propose a simple model system that can produce thermodynamic work exploiting active fluctuations. We consider a Brownian particle, trapped by an externally controlled harmonic confinement which time-periodically contracts and expands by modulating its spring constant e.g an optical tweezer. The system produces work by being alternately connected to two baths one passive and other active, modeled as exponentially correlated noise which breaks the fluctuation dissipation theorem. The average efficiency of the system is calculated exactly in quasistatic limit. Nonquasistatic regime is explored by numerics. Comparing with its passive counterpart, we also show that the active micro heat engine can be more efficient depending on the chosen parameter space. We also believe that our model can be realized experimentally with the help of bacterial baths.

cond-mat.stat-mech↗

arXiv2018

Stochastic Heat Engine Powered By Active Dissipation

Thermodynamics of nanoscale devices is an active area of research. Despite their noisy surrounding they often produce mechanical work (e.g. micro-heat engines), display rectified Brownian motion (e.g. molecular motors). This invokes research in terms of experimentally quantifiable thermodynamic efficiencies. Here, a Brownian particle is driven by a harmonic confinement with time-periodic contraction and expansion. The system produces work by being alternately (time-periodically) connected to baths with different dissipations. We analyze the system theoretically using stochastic thermodynamics. Averages of thermodynamic quantities like work, heat, efficiency, entropy are found analytically for long cycle times. Simulations are also performed in various cycle-times. They show excellent agreement with analytical calculations in the long cycle time limit. Distributions of work, efficiency, and large deviation function for efficiency are studied using simulations. We believe that the experimental realization of our model is possible.

cond-mat.stat-mech↗

arXiv2018

Simple analytical model of a thermal diode

Recently there is a lot of attention given to manipulation of heat by constructing thermal devices such as thermal diodes, transistors and logic gates. Many of the models proposed have an asymmetry which leads to the desired effect. Presence of non-linear interactions among the particles is also essential. But, such models lack analytical understanding. Here we propose a simple, analytically solvable model of a thermal diode. Our model consists of classical spins in contact with multiple heat baths and constant external magnetic fields. Interestingly the magnetic field is the only parameter required to get the effect of heat rectification.

cond-mat.stat-mech↗

arXiv2017

Twitching Motility of Bacteria with Type IV Pili: Fractal Walks, First passage time and their Consequences on Microcolonies

A human pathogen, \textit{Neisseria gonorrhoeae} (NG), moves on surfaces by attaching and retracting polymeric structures called Type IV pili. The \textit{tug-of-war} between the pili results in a two-dimensional stochastic motion called \textit{twitching motility}. In this paper, with the help of real time NG trajectories, we develop coarse-grained models for their description. The \textit{fractal properties} of these trajectories are determined and their influence on \textit{first passage time} and formation of bacterial microcolonies is studied. Our main observations are as follows: (i) NG performs a fast ballistic walk on small time scales and a slow diffusive walk over long time scales with a long crossover region; (ii) There exists a characteristic persistent length $l_p^*$ which yields the fastest growth of bacterial aggregates or biofilms. Our simulations reveal that $l_{p}^{*} \sim L^{0.6}$, where $L\times L$ is the surface on which the bacteria move; (iii) The morphologies have distinct fractal characteristics as a consequence of the ballistic and diffusive motion of the constituting bacteria.

physics.bio-ph↗

arXiv2017

Two coupled, driven Ising spin systems working as an Engine

Miniaturized heat engines constitutes a fascinating field of current research. They are being studied theoretically as well as experimentally, with experiments involving colloidal particles and harmonic traps and even bacterial baths acting like thermal baths. They are interesting to study because usual equilibrium thermodynamic notions can not be applied directly to these systems. These systems are micron sized or even smaller and they are subjected to laud thermal fluctuations. Thus one needs to study the behavior of such systems in terms of these fluctuations. Average thermodynamic quantities like work done, heat exchanged, efficiency loose meaning unless otherwise supported by their full probability distributions. Earlier studies on micro-engines are concerned with applying Carnot or Stirling engine protocols to miniaturized systems, where system undergoes typical two isothermal and two adiabatic changes. Unlike these models we for the first time, study a prototype system of two classical Ising spins driven by time dependent, phase different, external magnetic fields. These spins are {\it simultaneously} in contact with two heat reservoirs at different temperatures for the full duration of the driving protocol. Performance of the model as an engine or a refrigerator depends only on a single parameter namely the phase between two external drivings. We study this system in terms of fluctuations in efficiency and coefficient of performance (COP). We also find full distributions of these quantities numerically and also study the tails of these distributions. We also study reliability of this engine. We find the fluctuations dominate mean values of efficiency and COP and their probability distributions are broad with power law tails.

cond-mat.stat-mech↗

arXiv2016

Extracting Work from a single heat bath using velocity dependent feedback

Thermodynamics of nanoscale devices is an active area of research. Despite their noisy surround- ing they often produce mechanical work (e.g. micro-heat engines) or display rectified Brownian motion (e.g. molecular motors). This invokes the research in terms of experimentally quantifiable thermodynamic efficiencies. To enhance the efficiency of such devices, close-loop control is an useful technique. Here a single Brownian particle is driven by a harmonic confinement with time-periodic contraction and expansion, together with a velocity feedback that acts on the particle only when the trap contracts. Due to this feedback we are able to extract thermodynamic work out of the system having single heat bath without violating the Second Law of Thermodynamics. We analyse the system using stochastic thermodynamics.

cond-mat.stat-mech↗

arXiv2014

PT spectroscopy of the Rabi problem

We investigate the effects of a time-periodic, non-hermitian, PT-symmetric perturbation on a system with two (or few) levels, and obtain its phase diagram as a function of the perturbation strength and frequency. We demonstrate that when the perturbation frequency is close to one of the system resonances, even a vanishingly small perturbation leads to PT symmetry breaking. We also find a restored PT-symmetric phase at high frequencies, and at moderate perturbation strengths, we find multiple frequency windows where PT-symmetry is broken and restored. Our results imply that the PT-symmetric Rabi problem shows surprisingly rich phenomena absent in its hermitian or static counterparts.

physics.optics↗

arXiv2012

Deterministic and stochastic descriptions of gene expression dynamics

A key goal of systems biology is the predictive mathematical description of gene regulatory circuits. Different approaches are used such as deterministic and stochastic models, models that describe cell growth and division explicitly or implicitly etc. Here we consider simple systems of unregulated (constitutive) gene expression and compare different mathematical descriptions systematically to obtain insight into the errors that are introduced by various common approximations such as describing cell growth and division by an effective protein degradation term. In particular, we show that the population average of protein content of a cell exhibits a subtle dependence on the dynamics of growth and division, the specific model for volume growth and the age structure of the population. Nevertheless, the error made by models with implicit cell growth and division is quite small. Furthermore, we compare various models that are partially stochastic to investigate the impact of different sources of (intrinsic) noise. This comparison indicates that different sources of noise (protein synthesis, partitioning in cell division) contribute comparable amounts of noise if protein synthesis is not or only weakly bursty. If protein synthesis is very bursty, the burstiness is the dominant noise source, independent of other details of the model. Finally, we discuss two sources of extrinsic noise: cell-to-cell variations in protein content due to cells being at different stages in the division cycles, which we show to be small (for the protein concentration and, surprisingly, also for the protein copy number per cell) and fluctuations in the growth rate, which can have a significant impact.

q-bio.MN↗

arXiv2012

Sources of stochasticity in constitutive and autoregulated gene expression

Gene expression is inherently noisy as many steps in the read-out of the genetic information are stochastic. To disentangle the effect of different sources of stochasticity in such systems, we consider various models that describe some processes as stochastic and others as deterministic. We review earlier results for unregulated (constitutive) gene expression and present new results for a gene controlled by negative autoregulation with cell growth modeled by linear volume growth.

q-bio.MN↗

arXiv2010

Energy current magnification in coupled oscillator loops

Motivated by studies on current magnification in quantum mesoscopic systems we consider sound and heat transmission in classical models of oscillator chains. A loop of coupled oscillators is connected to two leads through which one can either transmit monochromatic waves or white noise signal from heat baths. We look for the possibility of current magnification in this system due to some asymmetry introduced between the two arms in the loop. We find that current magnification is indeed obtained for particular frequency ranges. However the integrated current shows the effect only in the presence of a pinning potential for the atoms in the leads. We also study the effect of anharmonicity on current magnification.

cond-mat.stat-mech↗

arXiv2010

Cooling classical particles with a microcanonical Szilard engine

We discuss the possibility of extraction of energy from a single heat bath in a cyclic process, under some special initial conditions. We give an explicit example in which a system initially prepared in a microcanonical ensemble, is able to perform such operation. The example is similar to the Szilard engine, but the microcanonical initial condition allows us to design a protocol where measurement is not necessary. We also discuss the limitations and possible extensions of this microcanonical Szilard engine.

cond-mat.stat-mech↗

arXiv2008

Particle current in symmetric exclusion process with time-dependent hopping rates

In a recent study, (Jain et al 2007 Phys. Rev. Lett. 99 190601), a symmetric exclusion process with time-dependent hopping rates was introduced. Using simulations and a perturbation theory, it was shown that if the hopping rates at two neighboring sites of a closed ring vary periodically in time and have a relative phase difference, there is a net DC current which decreases inversely with the system size. In this work, we simplify and generalize our earlier treatment. We study a model where hopping rates at all sites vary periodically in time, and show that for certain choices of relative phases, a DC current of order unity can be obtained. Our results are obtained using a perturbation theory in the amplitude of the time-dependent part of the hopping rate. We also present results obtained in a sudden approximation that assumes large modulation frequency.

cond-mat.stat-mech↗

arXiv2007

Driving particle current through narrow channels using classical pump

We study a symmetric exclusion process in which the hopping rates at two chosen adjacent sites vary periodically in time and have a relative phase difference. This mimics a colloidal suspension subjected to external space and time dependent modulation of the diffusion constant. The two special sites act as a classical pump by generating an oscillatory current with a nonzero ${\cal DC}$ value whose direction depends on the applied phase difference. We analyze various features in this model through simulations and obtain an expression for the $\cal{DC}$ current via a novel perturbative treatment.

cond-mat.stat-mech↗