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Stella X. Yu

Publications and source records attributed to Stella X. Yu.

At least 37 records · Page 2Linked to original sources

Coordinate-based neural representations for computational adaptive optics in widefield microscopy

Widefield microscopy is widely used for non-invasive imaging of biological structures at subcellular resolution. When applied to complex specimen, its image quality is degraded by sample-induced optical aberration. Adaptive optics can correct wavefront distortion and restore diffraction-limited resolution but require wavefront sensing and corrective devices, increasing system complexity and cost. Here, we describe a self-supervised machine learning algorithm, CoCoA, that performs joint wavefront estimation and three-dimensional structural information extraction from a single input 3D image stack without the need for external training dataset. We implemented CoCoA for widefield imaging of mouse brain tissues and validated its performance with direct-wavefront-sensing-based adaptive optics. Importantly, we systematically explored and quantitatively characterized the limiting factors of CoCoA's performance. Using CoCoA, we demonstrated the first in vivo widefield mouse brain imaging using machine-learning-based adaptive optics. Incorporating coordinate-based neural representations and a forward physics model, the self-supervised scheme of CoCoA should be applicable to microscopy modalities in general.

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Pose-Aware Self-Supervised Learning with Viewpoint Trajectory Regularization

Learning visual features from unlabeled images has proven successful for semantic categorization, often by mapping different $views$ of the same object to the same feature to achieve recognition invariance. However, visual recognition involves not only identifying $what$ an object is but also understanding $how$ it is presented. For example, seeing a car from the side versus head-on is crucial for deciding whether to stay put or jump out of the way. While unsupervised feature learning for downstream viewpoint reasoning is important, it remains under-explored, partly due to the lack of a standardized evaluation method and benchmarks. We introduce a new dataset of adjacent image triplets obtained from a viewpoint trajectory, without any semantic or pose labels. We benchmark both semantic classification and pose estimation accuracies on the same visual feature. Additionally, we propose a viewpoint trajectory regularization loss for learning features from unlabeled image triplets. Our experiments demonstrate that this approach helps develop a visual representation that encodes object identity and organizes objects by their poses, retaining semantic classification accuracy while achieving emergent global pose awareness and better generalization to novel objects. Our dataset and code are available at http://pwang.pw/trajSSL/.

cs.CV↗

Learning Hierarchical Image Segmentation For Recognition and By Recognition

Large vision and language models learned directly through image-text associations often lack detailed visual substantiation, whereas image segmentation tasks are treated separately from recognition, supervisedly learned without interconnections. Our key observation is that, while an image can be recognized in multiple ways, each has a consistent part-and-whole visual organization. Segmentation thus should be treated not as an end task to be mastered through supervised learning, but as an internal process that evolves with and supports the ultimate goal of recognition. We propose to integrate a hierarchical segmenter into the recognition process, train and adapt the entire model solely on image-level recognition objectives. We learn hierarchical segmentation for free alongside recognition, automatically uncovering part-to-whole relationships that not only underpin but also enhance recognition. Enhancing the Vision Transformer (ViT) with adaptive segment tokens and graph pooling, our model surpasses ViT in unsupervised part-whole discovery, semantic segmentation, image classification, and efficiency. Notably, our model (trained on unlabeled 1M ImageNet images) outperforms SAM (trained on 11M images and 1 billion masks) by absolute 8% in mIoU on PartImageNet object segmentation.

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The Audio-Visual BatVision Dataset for Research on Sight and Sound

Vision research showed remarkable success in understanding our world, propelled by datasets of images and videos. Sensor data from radar, LiDAR and cameras supports research in robotics and autonomous driving for at least a decade. However, while visual sensors may fail in some conditions, sound has recently shown potential to complement sensor data. Simulated room impulse responses (RIR) in 3D apartment-models became a benchmark dataset for the community, fostering a range of audiovisual research. In simulation, depth is predictable from sound, by learning bat-like perception with a neural network. Concurrently, the same was achieved in reality by using RGB-D images and echoes of chirping sounds. Biomimicking bat perception is an exciting new direction but needs dedicated datasets to explore the potential. Therefore, we collected the BatVision dataset to provide large-scale echoes in complex real-world scenes to the community. We equipped a robot with a speaker to emit chirps and a binaural microphone to record their echoes. Synchronized RGB-D images from the same perspective provide visual labels of traversed spaces. We sampled modern US office spaces to historic French university grounds, indoor and outdoor with large architectural variety. This dataset will allow research on robot echolocation, general audio-visual tasks and sound phænomena unavailable in simulated data. We show promising results for audio-only depth prediction and show how state-of-the-art work developed for simulated data can also succeed on our dataset. Project page: https://amandinebtto.github.io/Batvision-Dataset/

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Learning to Transform for Generalizable Instance-wise Invariance

Computer vision research has long aimed to build systems that are robust to spatial transformations found in natural data. Traditionally, this is done using data augmentation or hard-coding invariances into the architecture. However, too much or too little invariance can hurt, and the correct amount is unknown a priori and dependent on the instance. Ideally, the appropriate invariance would be learned from data and inferred at test-time. We treat invariance as a prediction problem. Given any image, we use a normalizing flow to predict a distribution over transformations and average the predictions over them. Since this distribution only depends on the instance, we can align instances before classifying them and generalize invariance across classes. The same distribution can also be used to adapt to out-of-distribution poses. This normalizing flow is trained end-to-end and can learn a much larger range of transformations than Augerino and InstaAug. When used as data augmentation, our method shows accuracy and robustness gains on CIFAR 10, CIFAR10-LT, and TinyImageNet.

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Debiased Learning for Remote Sensing Data

Deep learning has had remarkable success at analyzing handheld imagery such as consumer photos due to the availability of large-scale human annotations (e.g., ImageNet). However, remote sensing data lacks such extensive annotation and thus potential for supervised learning. To address this, we propose a highly effective semi-supervised approach tailored specifically to remote sensing data. Our approach encompasses two key contributions. First, we adapt the FixMatch framework to remote sensing data by designing robust strong and weak augmentations suitable for this domain. Second, we develop an effective semi-supervised learning method by removing bias in imbalanced training data resulting from both actual labels and pseudo-labels predicted by the model. Our simple semi-supervised framework was validated by extensive experimentation. Using 30\% of labeled annotations, it delivers a 7.1\% accuracy gain over the supervised learning baseline and a 2.1\% gain over the supervised state-of-the-art CDS method on the remote sensing xView dataset.

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Zero-shot Building Attribute Extraction from Large-Scale Vision and Language Models

Existing building recognition methods, exemplified by BRAILS, utilize supervised learning to extract information from satellite and street-view images for classification and segmentation. However, each task module requires human-annotated data, hindering the scalability and robustness to regional variations and annotation imbalances. In response, we propose a new zero-shot workflow for building attribute extraction that utilizes large-scale vision and language models to mitigate reliance on external annotations. The proposed workflow contains two key components: image-level captioning and segment-level captioning for the building images based on the vocabularies pertinent to structural and civil engineering. These two components generate descriptive captions by computing feature representations of the image and the vocabularies, and facilitating a semantic match between the visual and textual representations. Consequently, our framework offers a promising avenue to enhance AI-driven captioning for building attribute extraction in the structural and civil engineering domains, ultimately reducing reliance on human annotations while bolstering performance and adaptability.

cs.CV↗

How to guess a gradient

How much can you say about the gradient of a neural network without computing a loss or knowing the label? This may sound like a strange question: surely the answer is "very little." However, in this paper, we show that gradients are more structured than previously thought. Gradients lie in a predictable low-dimensional subspace which depends on the network architecture and incoming features. Exploiting this structure can significantly improve gradient-free optimization schemes based on directional derivatives, which have struggled to scale beyond small networks trained on toy datasets. We study how to narrow the gap in optimization performance between methods that calculate exact gradients and those that use directional derivatives. Furthermore, we highlight new challenges in overcoming the large gap between optimizing with exact gradients and guessing the gradients.

cs.LG↗

VEATIC: Video-based Emotion and Affect Tracking in Context Dataset

Human affect recognition has been a significant topic in psychophysics and computer vision. However, the currently published datasets have many limitations. For example, most datasets contain frames that contain only information about facial expressions. Due to the limitations of previous datasets, it is very hard to either understand the mechanisms for affect recognition of humans or generalize well on common cases for computer vision models trained on those datasets. In this work, we introduce a brand new large dataset, the Video-based Emotion and Affect Tracking in Context Dataset (VEATIC), that can conquer the limitations of the previous datasets. VEATIC has 124 video clips from Hollywood movies, documentaries, and home videos with continuous valence and arousal ratings of each frame via real-time annotation. Along with the dataset, we propose a new computer vision task to infer the affect of the selected character via both context and character information in each video frame. Additionally, we propose a simple model to benchmark this new computer vision task. We also compare the performance of the pretrained model using our dataset with other similar datasets. Experiments show the competing results of our pretrained model via VEATIC, indicating the generalizability of VEATIC. Our dataset is available at https://veatic.github.io.

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Unsupervised Selective Labeling for More Effective Semi-Supervised Learning

Given an unlabeled dataset and an annotation budget, we study how to selectively label a fixed number of instances so that semi-supervised learning (SSL) on such a partially labeled dataset is most effective. We focus on selecting the right data to label, in addition to usual SSL's propagating labels from labeled data to the rest unlabeled data. This instance selection task is challenging, as without any labeled data we do not know what the objective of learning should be. Intuitively, no matter what the downstream task is, instances to be labeled must be representative and diverse: The former would facilitate label propagation to unlabeled data, whereas the latter would ensure coverage of the entire dataset. We capture this idea by selecting cluster prototypes, either in a pretrained feature space, or along with feature optimization, both without labels. Our unsupervised selective labeling consistently improves SSL methods over state-of-the-art active learning given labeled data, by 8 to 25 times in label efficiency. For example, it boosts FixMatch by 10% (14%) in accuracy on CIFAR-10 (ImageNet-1K) with 0.08% (0.2%) labeled data, demonstrating that small computation spent on selecting what data to label brings significant gain especially under a low annotation budget. Our work sets a new standard for practical and efficient SSL.

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Unsupervised Feature Learning with Emergent Data-Driven Prototypicality

Given an image set without any labels, our goal is to train a model that maps each image to a point in a feature space such that, not only proximity indicates visual similarity, but where it is located directly encodes how prototypical the image is according to the dataset. Our key insight is to perform unsupervised feature learning in hyperbolic instead of Euclidean space, where the distance between points still reflect image similarity, and yet we gain additional capacity for representing prototypicality with the location of the point: The closer it is to the origin, the more prototypical it is. The latter property is simply emergent from optimizing the usual metric learning objective: The image similar to many training instances is best placed at the center of corresponding points in Euclidean space, but closer to the origin in hyperbolic space. We propose an unsupervised feature learning algorithm in Hyperbolic space with sphere pACKing. HACK first generates uniformly packed particles in the Poincaré ball of hyperbolic space and then assigns each image uniquely to each particle. Images after congealing are regarded more typical of the dataset it belongs to. With our feature mapper simply trained to spread out training instances in hyperbolic space, we observe that images move closer to the origin with congealing, validating our idea of unsupervised prototypicality discovery. We demonstrate that our data-driven prototypicality provides an easy and superior unsupervised instance selection to reduce sample complexity, increase model generalization with atypical instances and robustness with typical ones.

cs.CV↗

Bootstrapping Objectness from Videos by Relaxed Common Fate and Visual Grouping

We study learning object segmentation from unlabeled videos. Humans can easily segment moving objects without knowing what they are. The Gestalt law of common fate, i.e., what move at the same speed belong together, has inspired unsupervised object discovery based on motion segmentation. However, common fate is not a reliable indicator of objectness: Parts of an articulated / deformable object may not move at the same speed, whereas shadows / reflections of an object always move with it but are not part of it. Our insight is to bootstrap objectness by first learning image features from relaxed common fate and then refining them based on visual appearance grouping within the image itself and across images statistically. Specifically, we learn an image segmenter first in the loop of approximating optical flow with constant segment flow plus small within-segment residual flow, and then by refining it for more coherent appearance and statistical figure-ground relevance. On unsupervised video object segmentation, using only ResNet and convolutional heads, our model surpasses the state-of-the-art by absolute gains of 7/9/5% on DAVIS16 / STv2 / FBMS59 respectively, demonstrating the effectiveness of our ideas. Our code is publicly available.

cs.CV↗

Cut and Learn for Unsupervised Object Detection and Instance Segmentation

We propose Cut-and-LEaRn (CutLER), a simple approach for training unsupervised object detection and segmentation models. We leverage the property of self-supervised models to 'discover' objects without supervision and amplify it to train a state-of-the-art localization model without any human labels. CutLER first uses our proposed MaskCut approach to generate coarse masks for multiple objects in an image and then learns a detector on these masks using our robust loss function. We further improve the performance by self-training the model on its predictions. Compared to prior work, CutLER is simpler, compatible with different detection architectures, and detects multiple objects. CutLER is also a zero-shot unsupervised detector and improves detection performance AP50 by over 2.7 times on 11 benchmarks across domains like video frames, paintings, sketches, etc. With finetuning, CutLER serves as a low-shot detector surpassing MoCo-v2 by 7.3% APbox and 6.6% APmask on COCO when training with 5% labels.

cs.CV↗

High-fidelity Direct Contrast Synthesis from Magnetic Resonance Fingerprinting

Magnetic Resonance Fingerprinting (MRF) is an efficient quantitative MRI technique that can extract important tissue and system parameters such as T1, T2, B0, and B1 from a single scan. This property also makes it attractive for retrospectively synthesizing contrast-weighted images. In general, contrast-weighted images like T1-weighted, T2-weighted, etc., can be synthesized directly from parameter maps through spin-dynamics simulation (i.e., Bloch or Extended Phase Graph models). However, these approaches often exhibit artifacts due to imperfections in the mapping, the sequence modeling, and the data acquisition. Here we propose a supervised learning-based method that directly synthesizes contrast-weighted images from the MRF data without going through the quantitative mapping and spin-dynamics simulation. To implement our direct contrast synthesis (DCS) method, we deploy a conditional Generative Adversarial Network (GAN) framework and propose a multi-branch U-Net as the generator. The input MRF data are used to directly synthesize T1-weighted, T2-weighted, and fluid-attenuated inversion recovery (FLAIR) images through supervised training on paired MRF and target spin echo-based contrast-weighted scans. In-vivo experiments demonstrate excellent image quality compared to simulation-based contrast synthesis and previous DCS methods, both visually as well as by quantitative metrics. We also demonstrate cases where our trained model is able to mitigate in-flow and spiral off-resonance artifacts that are typically seen in MRF reconstructions and thus more faithfully represent conventional spin echo-based contrast-weighted images.

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Improving Unsupervised Video Object Segmentation with Motion-Appearance Synergy

We present IMAS, a method that segments the primary objects in videos without manual annotation in training or inference. Previous methods in unsupervised video object segmentation (UVOS) have demonstrated the effectiveness of motion as either input or supervision for segmentation. However, motion signals may be uninformative or even misleading in cases such as deformable objects and objects with reflections, causing unsatisfactory segmentation. In contrast, IMAS achieves Improved UVOS with Motion-Appearance Synergy. Our method has two training stages: 1) a motion-supervised object discovery stage that deals with motion-appearance conflicts through a learnable residual pathway; 2) a refinement stage with both low- and high-level appearance supervision to correct model misconceptions learned from misleading motion cues. Additionally, we propose motion-semantic alignment as a model-agnostic annotation-free hyperparam tuning method. We demonstrate its effectiveness in tuning critical hyperparams previously tuned with human annotation or hand-crafted hyperparam-specific metrics. IMAS greatly improves the segmentation quality on several common UVOS benchmarks. For example, we surpass previous methods by 8.3% on DAVIS16 benchmark with only standard ResNet and convolutional heads. We intend to release our code for future research and applications.

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Tracking the Dynamics of the Tear Film Lipid Layer

Dry Eye Disease (DED) is one of the most common ocular diseases: over five percent of US adults suffer from DED. Tear film instability is a known factor for DED, and is thought to be regulated in large part by the thin lipid layer that covers and stabilizes the tear film. In order to aid eye related disease diagnosis, this work proposes a novel paradigm in using computer vision techniques to numerically analyze the tear film lipid layer (TFLL) spread. Eleven videos of the tear film lipid layer spread are collected with a micro-interferometer and a subset are annotated. A tracking algorithm relying on various pillar computer vision techniques is developed. Our method can be found at https://easytear-dev.github.io/.

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Multi-Spectral Image Classification with Ultra-Lean Complex-Valued Models

Multi-spectral imagery is invaluable for remote sensing due to different spectral signatures exhibited by materials that often appear identical in greyscale and RGB imagery. Paired with modern deep learning methods, this modality has great potential utility in a variety of remote sensing applications, such as humanitarian assistance and disaster recovery efforts. State-of-the-art deep learning methods have greatly benefited from large-scale annotations like in ImageNet, but existing MSI image datasets lack annotations at a similar scale. As an alternative to transfer learning on such data with few annotations, we apply complex-valued co-domain symmetric models to classify real-valued MSI images. Our experiments on 8-band xView data show that our ultra-lean model trained on xView from scratch without data augmentations can outperform ResNet with data augmentation and modified transfer learning on xView. Our work is the first to demonstrate the value of complex-valued deep learning on real-valued MSI data.

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Compact and Optimal Deep Learning with Recurrent Parameter Generators

Deep learning has achieved tremendous success by training increasingly large models, which are then compressed for practical deployment. We propose a drastically different approach to compact and optimal deep learning: We decouple the Degrees of freedom (DoF) and the actual number of parameters of a model, optimize a small DoF with predefined random linear constraints for a large model of arbitrary architecture, in one-stage end-to-end learning. Specifically, we create a recurrent parameter generator (RPG), which repeatedly fetches parameters from a ring and unpacks them onto a large model with random permutation and sign flipping to promote parameter decorrelation. We show that gradient descent can automatically find the best model under constraints with faster convergence. Our extensive experimentation reveals a log-linear relationship between model DoF and accuracy. Our RPG demonstrates remarkable DoF reduction and can be further pruned and quantized for additional run-time performance gain. For example, in terms of top-1 accuracy on ImageNet, RPG achieves $96\%$ of ResNet18's performance with only $18\%$ DoF (the equivalent of one convolutional layer) and $52\%$ of ResNet34's performance with only $0.25\%$ DoF! Our work shows a significant potential of constrained neural optimization in compact and optimal deep learning.

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