arXiv subjects

YongKeun Park

Publications and source records attributed to YongKeun Park.

At least 73 records · Page 4Linked to original sources

arXiv2016

Label-free optical quantification of structural alterations in Alzheimer's disease

We present a quantitative label-free imaging of mouse whole brain tissue slices with sub-micrometre resolution, employing holographic microscopy and an automated scanning platform. From the measured light field images, scattering coefficients and anisotropies are quantitatively retrieved, which enables access to structural information about brain tissues. As a proof of principle, we demonstrate that these scattering parameters enable us to quantitatively address structural alteration in the brain tissues of mice with Alzheimer's disease.

physics.med-ph↗

arXiv2016

Optical diffraction tomography using a digital micromirror device for stable measurements of 4-D refractive index tomography of cells

Optical diffraction tomography (ODT) is an interferometric microscopy technique capable of measuring 3-D refractive index (RI) distribution of transparent samples. Multiple 2-D holograms of a sample illuminated with various angles are measured, from which 3-D RI map of the sample is reconstructed via the diffraction theory. ODT has been proved as a powerful tool for the study of biological cells, due to its non-invasiveness, label-free and quantitative imaging capability. Recently, our group has demonstrated that a digital micromirror device (DMD) can be exploited for fast and precise control of illumination beams for ODT. In this work, we systematically study the precision and stability of the ODT system equipped with a DMD and present measurements of 3-D and 4-D RI maps of various types of live cells including human red blood cells, white blood cells, hepatocytes, and HeLa cells. Furthermore, we also demonstrate the effective visualization of 3-D RI maps of live cells utilizing the measured information about the values and gradient of RI tomograms.

physics.optics↗

arXiv2016

Energy-leaky modes in partially measured scattering matrices of disordered media

We investigate energy-leaky modes induced by incomplete measurements of the scattering matrices of complex media. Due to the limited numerical apertures of an optical system, it is experimentally challenging to access theoretically predicted perfect transmission channels in the diffusive regime. By conducting numerical simulations on scattering matrices, we demonstrate that leaky modes contributed from uncollected transmission in the TM provides an energy transmission that is more enhanced than that predicted by measurement. On the other hand, a leaky mode originating from the uncollected reflection in the partial measurement of a RM strongly suppresses the energy transmission through a zero-reflection channel, restricting the transmission enhancement to no more than a 5-fold enhancement in limited optical systems. Our study provides useful insights into the effective control of energy delivery through scattering media and its ultimate limitation in practical schemes.

physics.optics↗

arXiv2015

Large-scale optical diffraction tomography for inspection of optical plastic lenses

Herein is presented an optical diffraction tomography (ODT) technique for measuring 3-D refractive index (RI) maps of optical plastic lenses. A Mach-Zehnder interferometer was used to measure multiple complex optical fields of a plastic lens immersed in RI matching oil, at various rotational orientations. From this, ODT was used to reconstruct a 3-D RI distribution of the plastic lens with unprecedented RI sensitivity (dn = 4.21 x 10^-5) and high resolution (12.8 um). As a demonstration, 3-D RI distributions of a 2-mm-diameter borosilicate sphere and a 5-mm-diameter plastic lens

physics.optics↗

arXiv2015

Hyperspectral optical diffraction tomography

Here, we present a novel microscopic technique for measuring wavelength-dependent three-dimensional (3-D) distributions of the refractive indices (RIs) of microscopic samples in the visible wavelengths. Employing 3-D quantitative phase microscopy techniques with a wavelength-swept source, 3-D RI tomograms were obtained in the range of 450 - 700 nm with a spectral resolution of a few nanometers. The capability of the technique was demonstrated by measuring the hyperspectral 3-D RI tomograms of polystyrene beads, human red blood cells, and hepatocytes. The results demonstrate the potential for label-free molecular specific 3-D tomography of biological samples.

physics.optics↗

arXiv2015

Optogenetic control of cell signaling pathway through scattering skull using wavefront shaping

We introduce a non-invasive approach for optogenetic regulation in biological cells through highly scattering skull tissue using wavefront shaping. The wavefront of the incident light was systematically controlled using a spatial light modulator in order to overcome multiple light-scattering in a mouse skull layer and to focus light on the target cells. We demonstrate that illumination with shaped waves enables spatiotemporal regulation of intracellular Ca2+ level at the individual-cell level.

physics.optics↗

arXiv2015

One-wave optical phase conjugation mirror by actively coupling arbitrary light fields into a single-mode reflector

Rewinding the arrow of time via phase conjugation is an intriguing phenomena made possible by the wave property of light. To exploit this phenomenon, diverse research fields have pursed the realization of an ideal phase conjugation mirror, but an optical system that requires a single-input and a single-output beam, like natural conventional mirrors has never been demonstrated. Here, we demonstrate the realization of a one-wave optical phase conjugation mirror using a spatial light modulator. An adaptable single-mode filter is created, and a phase-conjugate beam is then prepared by reverse propagation through this filter. Our method is simple, alignment free, and fast while allowing high power throughput in the time reversed wave, which have not been simultaneously demonstrated before. Using our method, we demonstrate high throughput full-field light delivery through highly scattering biological tissue and multimode fibers, even for quantum dot fluorescence.

physics.optics↗

arXiv2015

In vivo deep tissue imaging using wavefront shaping optical coherence tomography

Multiple light scattering in tissue limits the penetration of optical coherence tomography (OCT) imaging. Here, we present in-vivo OCT imaging of a live mouse using wavefront shaping to enhance the penetration depth. A digital micro-mirror device (DMD) was used in a spectral-domain OCT system for complex wavefront shaping of an incident beam which resulted in the optimal delivery of light energy into deep tissue. Ex-vivo imaging of chicken breasts and mouse ear tissues showed enhancements in the strength of the image signals and the penetration depth, and in-vivo imaging of the tail of a live mouse provided a multilayered structure inside the tissue, otherwise invisible in conventional OCT imaging. Signal enhancements by a factor of 3-7 were acquired for various experimental conditions and samples.

physics.med-ph↗

arXiv2015

Measurements of complex refractive indices of photoactive yellow protein

A novel optical technique for measuring the complex refractive index (CRI) of photoactive proteins over the wide range of visible wavelengths is presented. Employing quantitative phase microscopy equipped with a wavelength swept source, optical fields transmitted from a solution of photoactive proteins were precisely measured, from which the CRIs of the photoactive proteins were retrieved with the Fourier light scattering technique. Using the present method, both the real and imaginary RIs of a photoactive yellow protein (PYP) solution were precisely measured over a broad wavelength range (461 - 582 nm). The internal population of the ground and excited states were switched by blue light excitation (445 nm center wavelength), and the broadband refractive index increments of each state were measured. The significant CRI deviation between in the presence and absence of the blue excitation was quantified and explained based on the Kramers-Kronig relations.

physics.chem-ph↗

arXiv2015

Alterations in cell surface area and deformability of individual human red blood cells in stored blood

The functionality and viability of stored human red blood cells (RBCs) is an important clinical issue in transfusion. To systematically investigate changes in stored whole blood, the hematological properties of individual RBCs were quantified in blood samples stored for various periods with and without a preservation solution called CPDA-1. With 3-D quantitative phase imaging techniques, the optical measurements of the 3-D refractive index (RI) distributions and membrane fluctuations were done at the individual cell level. From the optical measurements, the morphological (volume, surface area and sphericity), biochemical (hemoglobin content and concentration), and mechanical parameters (dynamic membrane fluctuation) were simultaneously quantified to investigate the functionalities and their progressive alterations in stored RBCs. Our results show that the stored RBCs without CPDA-1 had a dramatic morphological transformation from discocytes to spherocytes within 2 weeks which was accompanied with significant decreases in cell deformability and cell surface area, and increases in sphericity. However, the stored RBCs with CPDA-1 maintained their morphology and deformability for up to 6 weeks.

physics.med-ph↗

arXiv2015

Active illumination using a digital micromirror device for quantitative phase imaging

We present a powerful and cost-effective method for active illumination using a digital micromirror device (DMD) for quantitative phase imaging techniques. Displaying binary illumination patterns on a DMD with appropriate spatial filtering, plane waves with various illumination angles are generated and impinged onto a sample. Complex optical fields of the sample obtained with various incident angles are then measured via Mach-Zehnder interferometry, from which a high-resolution two-dimensional synthetic aperture phase image and a three-dimensional refractive index tomogram of the sample are reconstructed. We demonstrate the fast and stable illumination control capability of the proposed method by imaging colloidal spheres and biological cells, including a human red blood cell and a HeLa cell.

physics.optics↗

arXiv2015

Quantitative Morphological and Biochemical Studies on Human Downy Hairs using 3-D Quantitative Phase Imaging

This study presents the morphological and biochemical findings on human downy arm hairs using 3-D quantitative phase imaging techniques. 3-D refractive index tomograms and high-resolution 2-D synthetic aperture images of individual downy arm hairs were measured using a Mach-Zehnder laser interferometric microscopy equipped with a two-axis galvanometer mirror. From the measured quantitative images, the biochemical and morphological parameters of downy hairs were non-invasively quantified including the mean refractive index, volume, cylinder, and effective radius of individual hairs. In addition, the effects of hydrogen peroxide on individual downy hairs were investigated.

physics.bio-ph↗

arXiv2015

3-D refractive index tomograms and deformability of individual human red blood cells from cord blood of newborn infants and maternal blood

Red blood cells (RBCs) from the cord blood of newborn infants have distinctive functions for fetal and infant development. To systematically investigate the biophysical characteristics of individual cord RBCs in newborn infants, a comparative study was performed of RBCs from cord blood of newborn infants, and of adult RBCs from mothers or non-pregnant women, employing optical holographic micro-tomography. Optical measurements of 3-D refractive index distributions, and of dynamic membrane fluctuations of individual RBCs, enabled retrieval of the morphological, biochemical, and mechanical properties of cord, maternal, and adult RBCs at the individual cell level. The volume and surface area of the cord RBCs were significant larger than those of RBCs from non-pregnant women, and cord RBCs have more flattened shapes than RBCs in adults. In addition, the Hb content in the cord RBCs of newborns was significantly greater. The Hb concentration in cord RBCs was higher than for non-pregnant women or maternal RBCs, but they were within the physiological range of adults. Interestingly, the amplitude of dynamic membrane fluctuations in cord RBCs were comparable to those in non-pregnant women and maternal RBCs, suggesting that the deformability of cord RBCs is similar to that of healthy RBCs in adults.

physics.med-ph↗

arXiv2015

Label-free characterization of white blood cells by measuring 3D refractive index maps

The characterization of white blood cells (WBCs) is crucial for blood analyses and disease diagnoses. However, current standard techniques rely on cell labeling, a process which imposes significant limitations. Here we present three-dimensional (3D) optical measurements and the label-free characterization of mouse WBCs using optical diffraction tomography. 3D refractive index (RI) tomograms of individual WBCs are constructed from multiple two-dimensional quantitative phase images of samples illuminated at various angles of incidence. Measurements of the 3D RI tomogram of WBCs enable the separation of heterogeneous populations of WBCs using quantitative morphological and biochemical information. Time-lapse tomographic measurements also provide the 3D trajectory of micrometer-sized beads ingested by WBCs. These results demonstrate that optical diffraction tomography can be a useful and versatile tool for the study of WBCs.

physics.bio-ph↗

arXiv2015

Characterizations of individual mouse red blood cells parasitized by Babesia microti using 3-D holographic microscopy

Babesia microti causes emergency human babesiosis. However, little is known about the alterations in B. microti invaded red blood cells (Bm-RBCs) at the individual cell level. Through quantitative phase imaging techniques based on laser interferometry, we present the simultaneous measurements of structural, chemical, and mechanical modifications in individual mouse Bm-RBCs. 3-D refractive index maps of individual RBCs and in situ parasite vacuoles are imaged, from which total contents and concentration of dry mass are also precisely quantified. In addition, we examine the dynamic membrane fluctuation of Bm-RBCs, which provide information on cell membrane deformability.

physics.bio-ph↗

arXiv2015

Measuring large optical reflection matrices of turbid media

We report the measurement of a large optical reflection matrix (RM) of a highly disordered medium. Incident optical fields onto a turbid sample are controlled by a spatial light modulator, and the corresponding fields reflected from the sample are measured using full-field Michelson interferometry. The number of modes in the measured RM is set to exceed the number of resolvable modes in the scattering media. We successfully study the subtle intrinsic correlations in the RM which agrees with the theoretical prediction by random-matrix theory when the effect of the limited numerical aperture on the eigenvalue distribution of the RM is taken into account. The possibility of the enhanced delivery of incident energy into scattering media is also examined from the eigenvalue distribution which promises efficient light therapeutic applications.

physics.optics↗

arXiv2015

Recent advances in wavefront shaping techniques for biomedical applications

Due to the highly inhomogeneous distributions of refractive indexes, light propagation in complex media such as biological tissue experiences multiple light scattering events. The suppression and control of multiple light scattering events are investigated because they offer the possibility of optical focusing and imaging through biological tissues, and they may open new avenues for diagnosis and treatment of several human diseases. In order to provide insight into how new optical techniques can address the issues of multiple light scattering in biomedical applications, the recent progress in optical wavefront-shaping techniques is summarized.

physics.optics↗

arXiv2015

Label-free identification of individual bacteria using Fourier transform light scattering

Rapid identification of bacterial species is crucial in medicine and food hygiene. In order to achieve rapid and label-free identification of bacterial species at the single bacterium level, we propose and experimentally demonstrate an optical method based on Fourier transform light scattering (FTLS) measurements and statistical classification. For individual rod-shaped bacteria belonging to four bacterial species (Listeria monocytogenes, Escherichia coli, Lactobacillus casei, and Bacillus subtilis), two-dimensional angle-resolved light scattering maps are precisely measured using FTLS technique. The scattering maps are then systematically analyzed, employing statistical classification in order to extract the unique fingerprint patterns for each species, so that a new unidentified bacterium can be identified by a single light scattering measurement. The single-bacterial and label-free nature of our method suggests wide applicability for rapid point-of-care bacterial diagnosis.

physics.optics↗