arXiv subjects

Yongshuai Ge

Publications and source records attributed to Yongshuai Ge.

At least 19 recordsLinked to original sources

arXiv2026

Laboratory X-ray Microscopy Using Fresnel Zone Plate: Method and Practice

This book was written to share our experience in developing a Fresnel zone plate (FZP) based X-ray microscope. The research began in September 2020, when we were going to build such a scientific imaging instrument from scratch in our laboratory. At that time, we could not find a textbook that systematically explained the entire development process step by step. We therefore had to make progress through trials and mistakes. After nearly five years of hard effort, we finally managed to build such an X-ray microscope in April 2025. Through this experience, we came to realize how challenging it can be to develop a new FZP-based X-ray microscope without systematic guidance. We therefore believe that it is worthwhile to share the learned lessons with readers who may be interested in developing their own FZP-based X-ray microscopes in the future. I would encourage readers to treat this book as a practical manual rather than a traditional textbook. Readers are not expected to be experts in X-ray imaging. Instead, a basic background in college-level physics should be sufficient to understand most of the material. Inevitably, the current edition has limitations and may contain omissions or inaccuracies due to the authors' limited experience and perspective. I sincerely welcome comments, suggestions and discussions from readers, please feel free to contact me at geyongshuai1987@qq.com. Your feedback will be greatly appreciated and will help make future editions of this book more complete.

physics.optics↗

arXiv2024

Scatter correction for photon-counting detector based CBCT imaging

Objective: The aim of this study is to validate the effectiveness of an energy-modulated scatter correction method in suppressing scatter in photon-counting detector (PCD)-based cone beam CT (CBCT) imaging. Approach: The scatter correction method, named e-Grid, which was initially applied to dual-layer flat-panel detector (DLFPD)-based CBCT imaging, was tested for its performance in PCD-CBCT imaging. Benchtop PCD-CBCT imaging experiments were conducted to verify the effectiveness of the e-Grid method. Additionally, quantitative metrics were measured from these experimental results. Main results: It was found that the use of the e-Grid method could significantly eliminate cupping artifacts caused by Compton scatter in PCD-CBCT imaging. Meanwhile, its effectiveness was observed in both low- and high-energy images, as well as for objects of varying sizes. Quantitative results showed that the e-Grid method could reduce scatter artifacts by at least 71% in low-energy images and 75% in high-energy images. Significance: It was demonstrated that the scatter correction method originally applied to DLFPD-based CBCT could also perform well in PCD-CBCT, showing that the e-Grid method has great potential for application in other spectral CBCT imaging systems.

physics.med-ph↗

arXiv2024

CBCT scatter correction with dual-layer flat-panel detector

Background: Recently, the popularity of dual-layer flat-panel detector (DL-FPD) based dual-energy cone-beam CT (DE-CBCT) imaging has been increasing. However, the image quality of DE-CBCT remains constrained by the Compton scattered X-ray photons. Purpose: The objective of this study is to develop an energy-modulated scatter correction method for DL-FPD based CBCT imaging. Methods: In DL-FPD, a certain portion of the X-ray photons (mainly low-energy primary and scattered photons) passing through the object are captured by the top detector layer, while the remaining X-ray photons (mainly high-energy primary and scattered photons) are collected by the bottom detector layer. Based on the two set of distinct low-energy and high-energy measurements, a linear signal model was approximated for the dual-energy primary and scattered signals on DL-FPD. The distributions of X-ray scatters were quickly estimated using this signal model. Monte Carlo (MC) simulation of a water phantom was conducted to verify this newly developed scatter estimation method. Moreover, physical experiments of water phantom, head phantom, and abdominal phantom were carried out to validate the real performance of this proposed scatter correction method. Results: The MC results showed that the e-Grid method was able to generate scatter distributions close to the ground truth. Moreover, the physical experiments demonstrated that the e-Grid method can greatly reduce the shading artifacts in both low-energy and high-energy CBCT images acquired from DL-FPD. On average, the image non-uniformity (NU) was reduced by over 77% in the low-energy CBCT image and by over 66% in the high-energy CBCT image. A a consequence, the accuracy of the decomposed multi-material bases was substantially improved.

physics.med-ph↗

arXiv2024

Explanations of MTF discrepancy in grating-based X-ray differential phase contrast CT imaging

As a multi-contrast X-ray computed tomography (CT) imaging system, the grating-based Talbot-Lau interferometer is able to generate the absorption contrast and differential phase contrast (DPC) images concurrently. However, experiments found that the absorption CT (ACT) images have better spatial resolution, i.e., higher modulation transfer function (MTF), than the differential phase contrast CT (DPCT) images. Until now, the root cause of such observed discrepancy has not been rigorously investigated. Through physical experiments, this study revealed that the phase grating in the Talbot-Lau interferometer induces direct superposition of paired split absorption signals and inverse superposition of paired split phase signals via diffraction. Further simulation experiments demonstrated that this splitting leads to a reduction in MTF in both ACT and DPCT images, with distinct superposition mechanisms contributing to the lower MTF in DPCT. Besides, such MTF discrepancy may also be affected in a minor extent by object composition, sample size, beam spectra and detector pixel size. Based on this study, the spatial resolution could be optimized when designing a grating-based DPC imaging system.

physics.med-ph↗

arXiv2023

Model-driven CT reconstruction algorithm for nano-resolution X-ray phase contrast imaging

The low-density imaging performance of a zone plate based nano-resolution hard X-ray computed tomography (CT) system can be significantly improved by incorporating a grating-based Lau interferometer. Due to the diffraction, however, the acquired nano-resolution phase signal may suffer splitting problem, which impedes the direct reconstruction of phase contrast CT (nPCT) images. To overcome, a new model-driven nPCT image reconstruction algorithm is developed in this study. In it, the diffraction procedure is mathematically modeled into a matrix B, from which the projections without signal splitting can be generated invertedly. Furthermore, a penalized weighed least-square model with total variation (PWLS-TV) is employed to denoise these projections, from which nPCT images with high accuracy are directly reconstructed. Numerical and physical experiments demonstrate that this new algorithm is able to work with phase projections having any splitting distances. Results also reveal that nPCT images with higher signal-to-noise-ratio (SNR) would be reconstructed from projections with larger signal splittings. In conclusion, a novel model-driven nPCT image reconstruction algorithm with high accuracy and robustness is verified for the Lau interferometer based hard X-ray nano-resolution phase contrast imaging.

eess.IV↗

arXiv2023

Super resolution dual-layer CBCT imaging with model-guided deep learning

Objective: This study aims at investigating a novel super resolution CBCT imaging technique with the dual-layer flat panel detector (DL-FPD). Approach: In DL-FPD based CBCT imaging, the low-energy and high-energy projections acquired from the top and bottom detector layers contain intrinsically mismatched spatial information, from which super resolution CBCT images can be generated. To explain, a simple mathematical model is established according to the signal formation procedure in DL-FPD. Next, a dedicated recurrent neural network (RNN), named as suRi-Net, is designed by referring to the above imaging model to retrieve the high resolution dual-energy information. Different phantom experiments are conducted to validate the performance of this newly developed super resolution CBCT imaging method. Main Results: Results show that the proposed suRi-Net can retrieve high spatial resolution information accurately from the low-energy and high-energy projections having lower spatial resolution. Quantitatively, the spatial resolution of the reconstructed CBCT images of the top and bottom detector layers is increased by about 45% and 54%, respectively. Significance: In future, suRi-Net provides a new approach to achieve high spatial resolution dual-energy imaging in DL-FPD based CBCT systems.

physics.med-ph↗

arXiv2022

Super resolution dual-energy cone-beam CT imaging with dual-layer flat-panel detector

For medical cone-beam computed tomography (CBCT) imaging, the native receptor array of the flat-panel detector (FPD) is usually binned into a reduced matrix size. By doing so, the signal readout speed can be increased by over 4-9 times at the expense of sacrificing the spatial resolution by at least 50%-67%. Clearly, such tradition poses a main bottleneck in generating high spatial resolution and high temporal resolution CBCT images at the same time. In addition, the conventional FPD is also difficult in generating dual-energy CBCT images. In this paper, we propose an innovative super resolution dual-energy CBCT imaging method, named as suRi, based on dual-layer FPD (DL-FPD) to overcome these aforementioned difficulties at once. With suRi, specifically, an 1D or 2D sub-pixel (half pixel in this study) shifted binning is applied to replace the conventionally aligned binning to double the spatial sampling rate during the dual-energy data acquisition. As a result, the suRi approach provides a new strategy to enable high signal readout speed and high spatial resolution CBCT imaging with FPD. Moreover, a penalized likelihood material decomposition algorithm is developed to directly reconstruct the high resolution bases from the dual-energy CBCT projections containing spatial sub-pixel shifts. Experiments based on the single-layer FPD and DL-FPD are performed with physical phantoms and biological specimen to validate this newly developed suRi method. The synthesized monochromatic CT imaging results demonstrate that suRi can significantly improve the spatial image resolution by 46.15%. We believe the developed suRi method would be capable to greatly enhance the imaging performance of the DL-FPD based dual-energy CBCT systems in future.

physics.med-ph↗

arXiv2022

CMOS based high-resolution dynamic X-ray imaging with inorganic perovskite

High-resolution dynamic X-ray detector is crucial for time-resolved digital radiography (DR) imaging and fast 3D medical computed tomography (CT) imaging. Recently, perovskites have become promising alternatives to conventional semi-conductor materials, e.g., Si, a-Se and CdTe, for direct X-ray detection. However, the feasibility of their combination with high-speed pixelated complementary metal-oxide-semiconductor (CMOS) arrays remains unknown. This work originally reports an innovative direct-conversion X-ray detector fabricated with 300 micrometer thick inorganic perovskite film printed on a tailored CMOS array. In-house measurements demonstrate that the CsPbBr3 film has excellent optoelectric properties of an electron mobility-lifetime product of 3.40x10$^{-5}$ cm$^2$ V$^{-1}$, and the X-ray detector exhibits high sensitivity of 9341uC Gy$_{\rm air}^{-1}$ cm$^{-2}$, and low detection limit of 588 nGy$_{\rm air}^{-1}$. This CMOS X-ray imaging detector achieves a high spatial resolution up to 5.5 lp/mm (close to the resolution limit of 6.0 lp/mm), and >300 frame per second (fps) readout speed. DR image of a resolution pattern phantom and a anesthesia mice, CT images of a biological specimen are acquired for the first time.

physics.app-ph↗

arXiv2022

Dual-domain Attention-based Deep Network for Sparse-view CT Artifact Reduction

Due to the wide applications of X-ray computed tomography (CT) in medical imaging activities, radiation exposure has become a major concern for public health. Sparse-view CT is a promising approach to reduce the radiation dose by down-sampling the total number of acquired projections. However, the CT images reconstructed by this sparse-view imaging approach suffer from severe streaking artifacts and structural information loss. In this work, an end-to-end dual-domain attention-based deep network (DDANet) is proposed to solve such an ill-posed CT image reconstruction problem. The image-domain CT image and the projection-domain sinogram are put into the two parallel sub-networks of the DDANet to independently extract the distinct high-level feature maps. In addition, a specified attention module is introduced to fuse the aforementioned dual-domain feature maps to allow complementary optimizations of removing the streaking artifacts and mitigating the loss of structure. Numerical simulations, anthropomorphic thorax phantom and in vivo pre-clinical experiments are conducted to verify the sparse-view CT imaging performance of the DDANet. Results demonstrate that this newly developed approach is able to robustly remove the streaking artifacts while maintaining the fine structures. As a result, the DDANet provides a promising solution in achieving high quality sparse-view CT imaging.

physics.med-ph↗

arXiv2021

X-ray phase-sensitive microscope imaging with a grating interferometer: theory and simulation

In this work, a general theoretical framework is presented to explain the formation of the phase signal in an X-ray microscope integrated with a grating interferometer, which simultaneously enables the high spatial resolution imaging and the improved image contrast. Using this theory, several key parameters of phase contrast imaging can be predicted, for instance, the fringe visibility and period, the conversion condition from the differential phase imaging (DPI) to the phase difference imaging (PDI). Additionally, numerical simulations are performed with certain X-ray optical components and imaging geometry. Results demonstrate the accuracy of this developed quantitative analysis method of X-ray phase-sensitive microscope imaging.

physics.optics↗

arXiv2020

DIRECT-Net: a unified mutual-domain material decomposition network for quantitative dual-energy CT imaging

By acquiring two sets of tomographic measurements at distinct X-ray spectra, the dual-energy CT (DECT) enables quantitative material-specific imaging. However, the conventionally decomposed material basis images may encounter severe image noise amplification and artifacts, resulting in degraded image quality and decreased quantitative accuracy. Iterative DECT image reconstruction algorithms incorporating either the sinogram or the CT image prior information have shown potential advantages in noise and artifact suppression, but with the expense of large computational resource, prolonged reconstruction time, and tedious manual selections of algorithm parameters. To partially overcome these limitations, we develop a domain-transformation enabled end-to-end deep convolutional neural network (DIRECT-Net) to perform high quality DECT material decomposition. Specifically, the proposed DIRECT-Net has immediate accesses to mutual-domain data, and utilizes stacked convolution neural network (CNN) layers for noise reduction and material decomposition. The training data are numerically simulated based on the underlying physics of DECT imaging.The XCAT digital phantom, iodine solutions phantom, and biological specimen are used to validate the performance of DIRECT-Net. The qualitative and quantitative results demonstrate that this newly developed DIRECT-Net is promising in suppressing noise, improving image accuracy, and reducing computation time for future DECT imaging.

physics.med-ph↗

arXiv2020

DIR-DBTnet: Deep iterative reconstruction network for 3D digital breast tomosynthesis imaging

Purpose: The goal of this study is to develop a novel deep learning (DL) based reconstruction framework to improve the digital breast tomosynthesis (DBT) imaging performance. Methods: In this work, the DIR-DBTnet is developed for DBT image reconstruction by unrolling the standard iterative reconstruction algorithm within the deep learning framework. In particular, such network learns the regularizer and the iteration parameters automatically through network training with a large amount of simulated DBT data. Afterwards, both numerical and experimental data are used to evaluate its performance. Quantitative metrics such as the artifact spread function (ASF), breast density, and the signal difference to noise ratio (SDNR) are used for image quality assessment. Results: For both numerical and experimental data, the proposed DIR-DBTnet generates reduced in-plane shadow artifacts and out-of-plane artifacts compared with the filtered back projection (FBP) and total variation (TV) methods. Quantitatively, the full width half maximum (FWHM) of the measured ASF curve from the numerical data is 33.4% and 19.7% smaller than those obtained with the FBP and TV methods, respectively; the breast density of the network reconstructed DBT images is more accurate and consistent with the ground truth. Conclusions: In conclusion, a deep iterative reconstruction network, DIR-DBTnet, has been proposed. Both qualitative and quantitative analyses of the numerical and experimental results show superior DBT imaging performance than the FBP and iterative algorithms.

physics.med-ph↗

arXiv2020

Estimation of angular sensitivity for X-ray interferometers with multiple phase gratings

Recently, X-ray interferometers with more than one phase grating have been developed for differential phase contrast (DPC) imaging. In this study, a novel framework is developed to predict such interferometers' angular sensitivity responses (the minimum detectable refraction angle). Experiments are performed on the dual and triple phase grating interferometers, separately. Measurements show strong consistency with the predicted sensitivity values. Using this new approach, the DPC imaging performance of X-ray interferometers with multiple phase gratings can be further optimized for future biomedical applications.

physics.ins-det↗

arXiv2019

Model-based Deep Medical Imaging: the roadmap of generalizing iterative reconstruction model using deep learning

Medical imaging is playing a more and more important role in clinics. However, there are several issues in different imaging modalities such as slow imaging speed in MRI, radiation injury in CT and PET. Therefore, accelerating MRI, reducing radiation dose in CT and PET have been ongoing research topics since their invention. Usually, acquiring less data is a direct but important strategy to address these issues. However, less acquisition usually results in aliasing artifacts in reconstructions. Recently, deep learning (DL) has been introduced in medical image reconstruction and shown potential on significantly speeding up MR reconstruction and reducing radiation dose. In this paper, we propose a general framework on combining the reconstruction model with deep learning to maximize the potential of deep learning and model-based reconstruction, and give the examples to demonstrate the performance and requirements of unrolling different algorithms using deep learning.

cs.CV↗

arXiv2019

X-ray differential phase contrast imaging on asymmetric dual-phase grating interferometer with source grating: theory and experiment

Recently, the dual-phase grating based X-ray differential phase contrast imaging technique has shown better radiation dose efficiency performance than the Talbot-Lau system. In this paper, we provide a theoretical analyses framework derived from wave optics to ease the design of such interferometer systems, including the inter-grating distances, the diffraction fringe period, the phase grating periods, and especially the source grating period if a medical grade X-ray tube with large focal spot is utilized. In addition, a geometrical explanation of the dual-phase grating system similar to the standard thin lens imaging theory is derived with an optical symmetry assumption for the first time. Finally, both numerical and experimental studies have been performed to validate the theory.

physics.optics↗

arXiv2019

Automatic image-domain Moire artifact reduction method in grating-based x-ray interferometry imaging

The aim of this study is to demonstrate the feasibility of removing the image Moire artifacts caused by system inaccuracies in grating-based x-ray interferometry imaging system via convolutional neural network (CNN) technique. Instead of minimizing these inconsistencies between the acquired phase stepping data via certain optimized signal retrieval algorithms, our newly proposed CNN-based method reduces the Moire artifacts in the image-domain via a learned image post-processing procedure. To ease the training data preparations, we propose to synthesize them with numerical natural images and experimentally obtained Moire artifact-only-images. Moreover, a fast signal processing method has also been developed to generate the needed large number of high quality Moire artifact-only images from finite number of acquired experimental phase stepping data. Experimental results show that the CNN method is able to remove Moire artifacts effectively, while maintaining the signal accuracy and image resolution.

physics.med-ph↗

arXiv2018

Deconvolution-Based Backproject-Filter (BPF) Computed Tomography Image Reconstruction Method Using Deep Learning Technique

For conventional computed tomography (CT) image reconstruction tasks, the most popular method is the so-called filtered-back-projection (FBP) algorithm. In it, the acquired Radon projections are usually filtered first by a ramp kernel before back-projected to generate CT images. In this work, as a contrary, we realized the idea of image-domain backproject-filter (BPF) CT image reconstruction using the deep learning techniques for the first time. With a properly designed convolutional neural network (CNN), preliminary results demonstrate that it is feasible to reconstruct CT images with maintained high spatial resolution and accurate pixel values from the highly blurred back-projection image, i.e., laminogram. In addition, experimental results also show that this deconvolution-based CT image reconstruction network has the potential to reduce CT image noise (up to 20%), indicating that patient radiation dose may be reduced. Due to these advantages, this proposed CNN-based image-domain BPF type CT image reconstruction scheme provides promising prospects in generating high spatial resolution, low-noise CT images for future clinical applications.

physics.med-ph↗

arXiv2011

The fast light of CsI(Na) crystals

The responds of different common alkali halide crystals to alpha-rays and gamma-rays are tested in our research. It is found that only CsI(Na) crystals have significantly different waveforms between alpha and gamma scintillations, while others have not this phenomena. It is suggested that the fast light of CsI(Na) crystals arises from the recombination of free electrons with self-trapped holes of the host crystal CsI. Self-absorption limits the emission of fast light of CsI(Tl) and NaI(Tl) crystals.

physics.ins-det↗